Variant report

Variant	rs59047782
Chromosome Location	chr3:46318206-46318207
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46317738..46318586-chr3:46409721..46410429,5	MCF-7	breast:
2	chr3:46317898..46318782-chr3:46409428..46410356,4	MCF-7	breast:
3	chr3:46317124..46320589-chr3:46407994..46411912,3	MCF-7	breast:
4	chr3:46317715..46318633-chr3:46413664..46414217,2	K562	blood:
5	chr3:46318130..46320432-chr3:46322132..46324607,2	K562	blood:
6	chr3:46317758..46318356-chr3:46414143..46415021,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160791	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17078681	1.00[EUR][1000 genomes]
rs2201148	1.00[EUR][1000 genomes]
rs3136664	1.00[EUR][1000 genomes]
rs3136665	1.00[EUR][1000 genomes]
rs41326147	1.00[EUR][1000 genomes]
rs41364446	1.00[EUR][1000 genomes]
rs41366344	1.00[EUR][1000 genomes]
rs41424051	1.00[EUR][1000 genomes]
rs41465848	1.00[EUR][1000 genomes]
rs41480548	1.00[EUR][1000 genomes]
rs4547740	1.00[EUR][1000 genomes]
rs56102061	1.00[EUR][1000 genomes]
rs56129454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56947484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57522944	1.00[EUR][1000 genomes]
rs58772082	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59654809	1.00[EUR][1000 genomes]
rs61145486	1.00[EUR][1000 genomes]
rs61752589	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6780714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793690	1.00[EUR][1000 genomes]
rs6796282	1.00[EUR][1000 genomes]
rs73833043	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833047	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833051	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833052	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46317600-46324600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:46317600-46329200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:46317800-46319400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr3:46317800-46329200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:46318000-46318600	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:46318000-46319000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr3:46318000-46319000	Enhancers	Placenta	Placenta
8	chr3:46318000-46319200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr3:46318000-46319400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:46318000-46319400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:46318000-46319400	Enhancers	Fetal Thymus	thymus
12	chr3:46318000-46319600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:46318000-46319800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:46318000-46331400	Enhancers	Primary T cells fromperipheralblood	blood
15	chr3:46318200-46318400	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
16	chr3:46318200-46318600	Enhancers	Primary B cells from cord blood	blood
17	chr3:46318200-46318800	Enhancers	Spleen	Spleen
18	chr3:46318200-46319400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr3:46318200-46319400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr3:46318200-46319400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr3:46318200-46319400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr3:46318200-46319400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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