Variant report

Variant	rs73833051
Chromosome Location	chr3:46325563-46325564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46313038..46315945-chr3:46324177..46326362,2	K562	blood:
2	chr3:46324012..46327012-chr3:46327940..46331563,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17078681	1.00[EUR][1000 genomes]
rs2201148	1.00[EUR][1000 genomes]
rs3136664	1.00[EUR][1000 genomes]
rs3136665	1.00[EUR][1000 genomes]
rs41326147	1.00[EUR][1000 genomes]
rs41364446	1.00[EUR][1000 genomes]
rs41366344	1.00[EUR][1000 genomes]
rs41424051	1.00[EUR][1000 genomes]
rs41465848	1.00[EUR][1000 genomes]
rs41480548	1.00[EUR][1000 genomes]
rs4547740	1.00[EUR][1000 genomes]
rs56102061	1.00[EUR][1000 genomes]
rs56129454	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56947484	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57522944	1.00[EUR][1000 genomes]
rs58772082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59047782	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59654809	1.00[EUR][1000 genomes]
rs61145486	1.00[EUR][1000 genomes]
rs61752589	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6780714	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793690	1.00[EUR][1000 genomes]
rs6796282	1.00[EUR][1000 genomes]
rs73833043	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833044	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833047	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833052	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833053	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46317600-46329200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:46317800-46329200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:46318000-46331400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr3:46318800-46327000	Weak transcription	Spleen	Spleen
5	chr3:46321400-46327800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:46322200-46329200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:46323000-46327600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr3:46323000-46328000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:46323000-46328200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr3:46323000-46329200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:46323400-46327400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr3:46323800-46328000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr3:46324000-46327200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr3:46324200-46325800	Enhancers	Primary B cells from peripheral blood	blood
15	chr3:46324200-46326000	Enhancers	Dnd41	blood
16	chr3:46324200-46326200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr3:46324200-46327200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr3:46324400-46331000	Weak transcription	Lung	lung
19	chr3:46324600-46325800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr3:46324600-46325800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:46324600-46336600	Weak transcription	Gastric	stomach
22	chr3:46324800-46326800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr3:46324800-46327000	Enhancers	Primary T cells from cord blood	blood
24	chr3:46325000-46325800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:46325000-46326800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr3:46325000-46327000	Weak transcription	GM12878-XiMat	blood
27	chr3:46325400-46325800	Enhancers	Primary B cells from cord blood	blood

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