Variant report

Variant	rs58772082
Chromosome Location	chr3:46323302-46323303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46322971..46325016-chr3:46392486..46394325,2	MCF-7	breast:
2	chr3:46318130..46320432-chr3:46322132..46324607,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17078681	1.00[EUR][1000 genomes]
rs2201148	1.00[EUR][1000 genomes]
rs3136664	1.00[EUR][1000 genomes]
rs3136665	1.00[EUR][1000 genomes]
rs41326147	1.00[EUR][1000 genomes]
rs41364446	1.00[EUR][1000 genomes]
rs41366344	1.00[EUR][1000 genomes]
rs41424051	1.00[EUR][1000 genomes]
rs41465848	1.00[EUR][1000 genomes]
rs41480548	1.00[EUR][1000 genomes]
rs4547740	1.00[EUR][1000 genomes]
rs56102061	1.00[EUR][1000 genomes]
rs56129454	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56947484	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57522944	1.00[EUR][1000 genomes]
rs59047782	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59654809	1.00[EUR][1000 genomes]
rs61145486	1.00[EUR][1000 genomes]
rs61752589	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6780714	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793690	1.00[EUR][1000 genomes]
rs6796282	1.00[EUR][1000 genomes]
rs73833043	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833044	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833047	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833052	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833053	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46317600-46324600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:46317600-46329200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:46317800-46329200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:46318000-46331400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr3:46318800-46327000	Weak transcription	Spleen	Spleen
6	chr3:46319400-46324200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:46321400-46327800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:46322000-46324000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr3:46322200-46329200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:46322400-46323400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr3:46322400-46323400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:46322400-46324600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:46322400-46324800	Weak transcription	Primary T cells from cord blood	blood
14	chr3:46322600-46323800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr3:46322600-46323800	Enhancers	Fetal Brain Male	brain
16	chr3:46323000-46323400	Enhancers	Fetal Stomach	stomach
17	chr3:46323000-46323800	Enhancers	Fetal Lung	lung
18	chr3:46323000-46325000	Enhancers	GM12878-XiMat	blood
19	chr3:46323000-46327600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr3:46323000-46328000	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr3:46323000-46328200	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr3:46323000-46329200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr3:46323200-46323600	Enhancers	Fetal Thymus	thymus

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