Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17078681	1.00[EUR][1000 genomes]
rs2201148	1.00[EUR][1000 genomes]
rs3136664	1.00[EUR][1000 genomes]
rs3136665	1.00[EUR][1000 genomes]
rs41326147	1.00[EUR][1000 genomes]
rs41364446	1.00[EUR][1000 genomes]
rs41366344	1.00[EUR][1000 genomes]
rs41424051	1.00[EUR][1000 genomes]
rs41465848	1.00[EUR][1000 genomes]
rs41480548	1.00[EUR][1000 genomes]
rs4547740	1.00[EUR][1000 genomes]
rs56102061	1.00[EUR][1000 genomes]
rs56129454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56947484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57522944	1.00[EUR][1000 genomes]
rs58772082	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59047782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59654809	1.00[EUR][1000 genomes]
rs61145486	1.00[EUR][1000 genomes]
rs61752589	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6780714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793690	1.00[EUR][1000 genomes]
rs6796282	1.00[EUR][1000 genomes]
rs73833043	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833047	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833051	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833052	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46303400-46315200	Weak transcription	Gastric	stomach
2	chr3:46310600-46311800	Enhancers	GM12878-XiMat	blood
3	chr3:46310600-46312600	Enhancers	Primary T cells fromperipheralblood	blood
4	chr3:46310600-46312600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:46310800-46312000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:46310800-46312000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr3:46310800-46312200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr3:46310800-46312400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:46310800-46312400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr3:46310800-46312600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr3:46311000-46311200	Enhancers	Fetal Stomach	stomach
12	chr3:46311000-46311400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:46311000-46311600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr3:46311000-46312000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr3:46311000-46312000	Enhancers	Dnd41	blood

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