Variant report
| Variant | rs6793690 |
|---|---|
| Chromosome Location | chr3:46206263-46206264 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs17078681 | 1.00[EUR][1000 genomes] |
| rs2201148 | 1.00[EUR][1000 genomes] |
| rs3136664 | 1.00[EUR][1000 genomes] |
| rs3136665 | 1.00[EUR][1000 genomes] |
| rs41326147 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41364446 | 1.00[EUR][1000 genomes] |
| rs41366344 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41406247 | 0.81[AFR][1000 genomes] |
| rs41424051 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41461744 | 0.81[AFR][1000 genomes] |
| rs41465848 | 0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41480548 | 0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4547740 | 1.00[EUR][1000 genomes] |
| rs56102061 | 1.00[EUR][1000 genomes] |
| rs56129454 | 1.00[EUR][1000 genomes] |
| rs56947484 | 1.00[EUR][1000 genomes] |
| rs57522944 | 1.00[EUR][1000 genomes] |
| rs58772082 | 1.00[EUR][1000 genomes] |
| rs59047782 | 1.00[EUR][1000 genomes] |
| rs59654809 | 1.00[EUR][1000 genomes] |
| rs61145486 | 1.00[EUR][1000 genomes] |
| rs61752589 | 1.00[EUR][1000 genomes] |
| rs6765904 | 0.89[AFR][1000 genomes] |
| rs6772596 | 1.00[EUR][1000 genomes] |
| rs6780714 | 1.00[EUR][1000 genomes] |
| rs6796282 | 1.00[EUR][1000 genomes] |
| rs73830670 | 1.00[EUR][1000 genomes] |
| rs73833043 | 1.00[EUR][1000 genomes] |
| rs73833044 | 1.00[EUR][1000 genomes] |
| rs73833047 | 1.00[EUR][1000 genomes] |
| rs73833051 | 1.00[EUR][1000 genomes] |
| rs73833052 | 1.00[EUR][1000 genomes] |
| rs73833053 | 1.00[EUR][1000 genomes] |
| rs753110 | 1.00[EUR][1000 genomes] |
| rs902761 | 0.83[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv876734 | chr3:45725031-46468467 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
| 2 | nsv498008 | chr3:45733423-46319401 | Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:46206000-46207200 | Weak transcription | Psoas Muscle | Psoas |
| 2 | chr3:46206200-46208400 | Strong transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 3 | chr3:46206200-46211600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
