Variant report

Variant	rs17078854
Chromosome Location	chr6:117463982-117463983
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17078847	1.00[AFR][1000 genomes]
rs17078856	1.00[AFR][1000 genomes]
rs58313943	0.88[AFR][1000 genomes]
rs61096312	0.85[AFR][1000 genomes]
rs61558286	0.91[AFR][1000 genomes]
rs73766176	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948766	chr6:117407275-117641016	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758076	chr6:117431224-117627275	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759465	chr6:117431224-117627275	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830785	chr6:117448943-117627275	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117461200-117467000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:117462800-117464000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:117462800-117464800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr6:117463000-117464400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:117463000-117464800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr6:117463200-117464000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:117463400-117464600	Enhancers	Fetal Heart	heart
8	chr6:117463600-117464000	Weak transcription	Psoas Muscle	Psoas
9	chr6:117463600-117464600	Weak transcription	Left Ventricle	heart
10	chr6:117463800-117464400	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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