Variant report

Variant	rs61558286
Chromosome Location	chr6:117487967-117487968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17078847	0.91[AFR][1000 genomes]
rs17078854	0.91[AFR][1000 genomes]
rs17078856	0.91[AFR][1000 genomes]
rs58313943	0.97[AFR][1000 genomes]
rs59985796	0.87[AFR][1000 genomes]
rs61096312	0.94[AFR][1000 genomes]
rs73766176	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948766	chr6:117407275-117641016	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758076	chr6:117431224-117627275	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759465	chr6:117431224-117627275	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830785	chr6:117448943-117627275	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2757190	chr6:117464048-117609529	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117486400-117491200	Enhancers	Fetal Muscle Leg	muscle
2	chr6:117487200-117489600	Enhancers	HSMM	muscle
3	chr6:117487200-117491200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:117487400-117488000	Weak transcription	Fetal Stomach	stomach
5	chr6:117487400-117488200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:117487600-117488800	Weak transcription	Esophagus	oesophagus
7	chr6:117487600-117489000	Weak transcription	Left Ventricle	heart
8	chr6:117487600-117489000	Weak transcription	Right Atrium	heart
9	chr6:117487600-117489400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:117487600-117491000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:117487800-117488000	Flanking Active TSS	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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