Variant report

Variant	rs17078947
Chromosome Location	chr3:46581057-46581058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59736457	0.84[AFR][1000 genomes]
rs60788205	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv876737	chr3:46569721-46595431	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46544800-46599400	Weak transcription	Right Atrium	heart
2	chr3:46549200-46585400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:46556400-46591000	Weak transcription	Psoas Muscle	Psoas
4	chr3:46558400-46591000	Weak transcription	Gastric	stomach
5	chr3:46567200-46586000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:46569000-46584200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:46571000-46583800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:46571600-46587000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:46577400-46581600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
10	chr3:46577600-46581600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
11	chr3:46578400-46581600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:46578400-46599200	Weak transcription	HSMMtube	muscle
13	chr3:46578800-46581200	Weak transcription	Right Ventricle	heart
14	chr3:46578800-46586200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:46579000-46581600	Enhancers	NHDF-Ad	bronchial
16	chr3:46579000-46583000	Weak transcription	Ovary	ovary
17	chr3:46579200-46581800	Flanking Active TSS	Dnd41	blood
18	chr3:46579200-46587800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr3:46579400-46581600	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr3:46579400-46581600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr3:46579600-46581200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr3:46579600-46584200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:46579800-46581400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr3:46579800-46581400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr3:46579800-46586200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr3:46580000-46581200	Weak transcription	Colonic Mucosa	Colon
27	chr3:46580000-46581400	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr3:46580000-46581400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr3:46580000-46581400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:46580000-46581600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr3:46580000-46581600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr3:46580200-46581200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:46580200-46581200	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr3:46580200-46581200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr3:46580200-46581200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:46580200-46581200	Enhancers	Fetal Heart	heart
37	chr3:46580200-46581200	Active TSS	Rectal Mucosa Donor 29	rectum
38	chr3:46580200-46581400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
39	chr3:46580200-46581400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr3:46580200-46581600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr3:46580200-46581800	Enhancers	K562	blood
42	chr3:46580200-46584400	Weak transcription	Placenta	Placenta
43	chr3:46580200-46586200	Weak transcription	Liver	Liver
44	chr3:46580400-46581200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
45	chr3:46580400-46581200	Flanking Active TSS	Thymus	Thymus
46	chr3:46580400-46581200	Flanking Active TSS	Osteobl	bone
47	chr3:46580400-46581400	Flanking Active TSS	Fetal Thymus	thymus
48	chr3:46580400-46581600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr3:46580600-46581200	Flanking Active TSS	Primary B cells from peripheral blood	blood
50	chr3:46580600-46581400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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