Variant report

Variant	rs17079279
Chromosome Location	chr6:117799608-117799609
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:85)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:85 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:117799600-117799750	HFF	foreskin:	n/a	n/a
2	CTCF	chr6:117799490-117800082	HCT-116	colon:	n/a	n/a
3	RAD21	chr6:117799581-117799897	K562	blood:	n/a	n/a
4	TCF7L2	chr6:117799606-117800097	HepG2	liver:	n/a	n/a
5	RAD21	chr6:117799348-117800128	HepG2	liver:	n/a	n/a
6	JUND	chr6:117799570-117799950	HepG2	liver:	n/a	n/a
7	TEAD4	chr6:117799456-117800260	HepG2	liver:	n/a	n/a
8	RAD21	chr6:117799537-117799958	GM12878	blood:	n/a	n/a
9	NFIC	chr6:117799490-117800116	HepG2	liver:	n/a	n/a
10	CTCF	chr6:117799580-117799730	HFF-Myc	foreskin:	n/a	n/a
11	RAD21	chr6:117799581-117799968	H1-hESC	embryonic stem cell:	n/a	n/a
12	NR2F2	chr6:117799484-117800017	K562	blood:	n/a	n/a
13	RXRA	chr6:117799516-117800105	HepG2	liver:	n/a	chr6:117799713-117799722
14	MYBL2	chr6:117799370-117800239	HepG2	liver:	n/a	n/a
15	SMC3	chr6:117799562-117799940	Hela-S3	cervix:	n/a	n/a
16	NFIC	chr6:117799167-117799655	GM12878	blood:	n/a	n/a
17	CTCF	chr6:117799488-117800171	A549	lung:	n/a	n/a
18	CTCF	chr6:117799510-117800018	HCT-116	colon:	n/a	n/a
19	MYBL2	chr6:117799304-117800281	HepG2	liver:	n/a	n/a
20	HNF4A	chr6:117799528-117800261	HepG2	liver:	n/a	chr6:117799712-117799727 chr6:117799713-117799725 chr6:117799713-117799727
21	RUNX3	chr6:117799532-117799934	GM12878	blood:	n/a	n/a
22	CTCF	chr6:117799600-117799750	HFF-Myc	foreskin:	n/a	n/a
23	CTCF	chr6:117799514-117799937	A549	lung:	n/a	n/a
24	RAD21	chr6:117799593-117799926	SK-N-SH_RA	brain:	n/a	n/a
25	CTCF	chr6:117799567-117799970	MCF-7	breast:	n/a	n/a
26	MBD4	chr6:117799475-117800232	HepG2	liver:	n/a	n/a
27	CTCF	chr6:117799530-117799889	MCF-7	breast:	n/a	n/a
28	ZNF143	chr6:117799564-117799929	GM12878	blood:	n/a	n/a
29	NR2F2	chr6:117799558-117799877	K562	blood:	n/a	n/a
30	RAD21	chr6:117799513-117800129	HepG2	liver:	n/a	n/a
31	HNF4A	chr6:117799407-117800069	HepG2	liver:	n/a	chr6:117799712-117799727 chr6:117799713-117799725 chr6:117799713-117799727
32	RAD21	chr6:117799494-117800091	A549	lung:	n/a	n/a
33	NR2F2	chr6:117799464-117800010	MCF-7	breast:	n/a	n/a
34	EP300	chr6:117799467-117800104	HepG2	liver:	n/a	n/a
35	SMC3	chr6:117799394-117799983	GM12878	blood:	n/a	n/a
36	RAD21	chr6:117799443-117800115	HepG2	liver:	n/a	n/a
37	TBP	chr6:117799576-117800093	HepG2	liver:	n/a	n/a
38	HNF4G	chr6:117799303-117800126	HepG2	liver:	n/a	chr6:117799713-117799725 chr6:117799713-117799727
39	RCOR1	chr6:117799608-117799979	HepG2	liver:	n/a	n/a
40	POLR2A	chr6:117799598-117799662	HepG2	liver:	n/a	n/a
41	FOXA1	chr6:117799438-117800068	HepG2	liver:	n/a	n/a
42	EBF1	chr6:117799516-117799876	GM12878	blood:	n/a	chr6:117799799-117799810
43	RAD21	chr6:117799463-117800017	HCT-116	colon:	n/a	n/a
44	RAD21	chr6:117799508-117800123	HCT-116	colon:	n/a	n/a
45	MBD4	chr6:117799261-117800248	HepG2	liver:	n/a	n/a
46	CTCF	chr6:117799537-117799977	K562	blood:	n/a	n/a
47	CTCF	chr6:117799591-117799866	GM12878	blood:	n/a	n/a
48	CEBPB	chr6:117799520-117800161	HepG2	liver:	n/a	n/a
49	MAZ	chr6:117799581-117799975	HepG2	liver:	n/a	n/a
50	CTCF	chr6:117799600-117799750	HRE	kidney:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:117797620..117801329-chr6:117802925..117805407,3	MCF-7	breast:
2	chr6:117797831..117799702-chr6:117802515..117805127,4	MCF-7	breast:
3	chr6:117788477..117790267-chr6:117797772..117800406,2	MCF-7	breast:
4	chr6:117798788..117807313-chr6:117921918..117925735,11	MCF-7	breast:
5	chr6:117797897..117799784-chr6:117801599..117803963,2	K562	blood:

No data

Variant related genes	Relation type
DCBLD1	TF binding region
ENSG00000164465	Chromatin interaction
ENSG00000047932	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs9387475	1.00[EUR][1000 genomes]
rs9387477	1.00[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9387480	1.00[EUR][1000 genomes]
rs9387485	0.92[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9401008	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9401012	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117797200-117800600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:117798200-117800200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:117798200-117800200	Enhancers	Fetal Intestine Large	intestine
4	chr6:117798400-117800000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:117798600-117800200	Enhancers	A549	lung
6	chr6:117798600-117802600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:117798800-117800000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:117798800-117801400	Enhancers	Liver	Liver
9	chr6:117799000-117800000	Enhancers	Fetal Intestine Small	intestine
10	chr6:117799200-117800200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:117799200-117800200	Flanking Active TSS	HepG2	liver
12	chr6:117799400-117799800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:117799400-117799800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
14	chr6:117799400-117799800	Flanking Active TSS	GM12878-XiMat	blood
15	chr6:117799400-117800000	Enhancers	Stomach Mucosa	stomach
16	chr6:117799400-117800000	Enhancers	HSMM	muscle
17	chr6:117799400-117800200	Enhancers	Duodenum Mucosa	Duodenum
18	chr6:117799600-117799800	Enhancers	Ovary	ovary
19	chr6:117799600-117799800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:117799600-117799800	Enhancers	NHDF-Ad	bronchial
21	chr6:117799600-117800000	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr6:117799600-117800200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:117799600-117800200	Enhancers	Small Intestine	intestine

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