Variant report

Variant	rs9401012
Chromosome Location	chr6:117806969-117806970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117805729..117808252-chr6:117923714..117925422,2	K562	blood:
2	chr6:117798788..117807313-chr6:117921918..117925735,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000047932	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17079279	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117805000-117810200	Weak transcription	Gastric	stomach
2	chr6:117805200-117807000	Weak transcription	Ovary	ovary
3	chr6:117805200-117807000	Flanking Active TSS	NH-A	brain
4	chr6:117805200-117807200	Flanking Active TSS	HUVEC	blood vessel
5	chr6:117805200-117807600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:117805200-117808400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:117805200-117814800	Weak transcription	Left Ventricle	heart
8	chr6:117805200-117816000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:117805200-117819400	Weak transcription	Small Intestine	intestine
10	chr6:117805200-117825600	Weak transcription	Lung	lung
11	chr6:117805200-117826600	Weak transcription	Esophagus	oesophagus
12	chr6:117805200-117851200	Weak transcription	Right Ventricle	heart
13	chr6:117805400-117807600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:117805400-117807600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:117805400-117819400	Weak transcription	Aorta	Aorta
16	chr6:117805600-117807000	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:117805600-117807400	Enhancers	NHDF-Ad	bronchial
18	chr6:117805600-117807600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:117805600-117807600	Enhancers	Liver	Liver
20	chr6:117805600-117807800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:117805600-117808000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:117805600-117814800	Weak transcription	K562	blood
23	chr6:117805600-117818800	Weak transcription	Fetal Kidney	kidney
24	chr6:117805600-117819400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:117805800-117807000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:117805800-117807000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:117805800-117807800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:117805800-117825600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr6:117805800-117826200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:117806200-117807000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:117806200-117807000	Enhancers	NHEK	skin
32	chr6:117806200-117807800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:117806200-117807800	Weak transcription	Fetal Intestine Small	intestine
34	chr6:117806200-117807800	Weak transcription	Fetal Stomach	stomach
35	chr6:117806200-117815000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:117806200-117815400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:117806200-117816000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:117806200-117819600	Weak transcription	Psoas Muscle	Psoas
39	chr6:117806200-117826400	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:117806200-117826600	Weak transcription	Pancreas	Pancrea
41	chr6:117806400-117807000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:117806400-117807000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:117806400-117807000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr6:117806400-117807200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr6:117806400-117807200	Transcr. at gene 5' and 3'	A549	lung
46	chr6:117806400-117807600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:117806600-117807000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:117806600-117807600	Enhancers	HepG2	liver
49	chr6:117806600-117807800	Weak transcription	Fetal Intestine Large	intestine
50	chr6:117806600-117808000	Enhancers	NHLF	lung

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