Variant report

Variant	rs17083013
Chromosome Location	chr4:54415901-54415902
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1398157	1.00[AMR][1000 genomes]
rs9968536	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54374400-54421000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:54384600-54424000	Weak transcription	Esophagus	oesophagus
3	chr4:54390400-54430400	Weak transcription	Stomach Mucosa	stomach
4	chr4:54400400-54417000	Weak transcription	Fetal Intestine Small	intestine
5	chr4:54400600-54424400	Weak transcription	Fetal Intestine Large	intestine
6	chr4:54404200-54424400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:54404600-54419200	Weak transcription	Placenta	Placenta
8	chr4:54408600-54421000	Weak transcription	Brain Anterior Caudate	brain
9	chr4:54408800-54420400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:54409200-54427000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:54409400-54417400	Weak transcription	Right Atrium	heart
12	chr4:54409400-54420200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:54411200-54419200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:54412200-54442400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:54413200-54418000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:54413200-54418000	Weak transcription	NHDF-Ad	bronchial
17	chr4:54413200-54424000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:54413800-54420200	Weak transcription	Pancreas	Pancrea
19	chr4:54413800-54421000	Weak transcription	Liver	Liver
20	chr4:54413800-54426000	Weak transcription	Right Ventricle	heart
21	chr4:54414000-54417800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:54414400-54417800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:54414400-54420400	Weak transcription	Aorta	Aorta
24	chr4:54414400-54422400	Weak transcription	Left Ventricle	heart
25	chr4:54414800-54417600	Weak transcription	HUVEC	blood vessel
26	chr4:54415200-54421200	Weak transcription	Brain Germinal Matrix	brain

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