Variant report

Variant	rs9968536
Chromosome Location	chr4:54297938-54297939
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10517286	1.00[YRI][hapmap]
rs13125807	1.00[YRI][hapmap]
rs1398157	1.00[AMR][1000 genomes]
rs17082533	1.00[YRI][hapmap]
rs17082544	1.00[YRI][hapmap]
rs17082560	1.00[YRI][hapmap]
rs17082563	1.00[YRI][hapmap]
rs17082591	1.00[YRI][hapmap]
rs17082628	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs17082643	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs17082702	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs17082778	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs17083013	1.00[AMR][1000 genomes]
rs28859306	0.94[AFR][1000 genomes]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54244600-54310600	Weak transcription	Spleen	Spleen
2	chr4:54244600-54319200	Weak transcription	Pancreas	Pancrea
3	chr4:54246200-54319200	Weak transcription	Aorta	Aorta
4	chr4:54246600-54311200	Weak transcription	Small Intestine	intestine
5	chr4:54253400-54327200	Weak transcription	Colonic Mucosa	Colon
6	chr4:54256600-54306200	Weak transcription	Stomach Mucosa	stomach
7	chr4:54256600-54319200	Weak transcription	Gastric	stomach
8	chr4:54267800-54302400	Weak transcription	Psoas Muscle	Psoas
9	chr4:54268000-54310400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:54268000-54327600	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:54268400-54319800	Weak transcription	A549	lung
12	chr4:54269400-54303000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:54270000-54330800	Weak transcription	Brain Substantia Nigra	brain
14	chr4:54270200-54316600	Weak transcription	Esophagus	oesophagus
15	chr4:54276400-54319000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:54276600-54302200	Weak transcription	Fetal Brain Female	brain
17	chr4:54276600-54319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:54276600-54319000	Weak transcription	Lung	lung
19	chr4:54276800-54310600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr4:54276800-54316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:54276800-54324800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:54286200-54303000	Weak transcription	Fetal Stomach	stomach
23	chr4:54286200-54310800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:54286200-54316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:54287800-54310400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr4:54288200-54307600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr4:54288200-54310800	Weak transcription	Brain Hippocampus Middle	brain
28	chr4:54291000-54300000	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr4:54291000-54310600	Weak transcription	Right Ventricle	heart
30	chr4:54291400-54302800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:54291400-54313200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr4:54291600-54298400	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr4:54291800-54302000	Strong transcription	NHDF-Ad	bronchial
34	chr4:54291800-54315000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:54291800-54329400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr4:54292000-54299000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:54292000-54299600	Strong transcription	Primary B cells from cord blood	blood
38	chr4:54292000-54300200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr4:54292000-54302200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:54292000-54314400	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr4:54292200-54300000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr4:54292200-54331200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr4:54292400-54298400	Strong transcription	Fetal Thymus	thymus
44	chr4:54292400-54298400	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr4:54292400-54299600	Strong transcription	Placenta	Placenta
46	chr4:54292400-54304800	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr4:54292800-54300200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr4:54293000-54298200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr4:54293000-54305000	Strong transcription	Adipose Nuclei	Adipose
50	chr4:54293200-54299200	Strong transcription	Fetal Kidney	kidney

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