Variant report

Variant	rs13125807
Chromosome Location	chr4:54351220-54351221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10008334	0.82[EUR][1000 genomes]
rs10012853	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10013573	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10028214	0.82[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1014056	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10517291	0.83[CHB][hapmap]
rs10517292	0.83[CHB][hapmap]
rs10517296	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11133267	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11935822	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11942086	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11944047	0.82[EUR][1000 genomes]
rs11946199	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12499401	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12501431	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12507723	0.82[EUR][1000 genomes]
rs13117240	0.82[EUR][1000 genomes]
rs13119372	0.82[EUR][1000 genomes]
rs13120051	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13130836	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1351514	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1399241	0.82[EUR][1000 genomes]
rs17082563	1.00[YRI][hapmap]
rs17082565	0.83[CHB][hapmap]
rs17082628	1.00[YRI][hapmap]
rs17082643	1.00[YRI][hapmap]
rs17082659	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17082702	1.00[YRI][hapmap]
rs17082778	1.00[YRI][hapmap]
rs17082910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2128103	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2271555	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2271557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2292579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34028346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34173240	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34317954	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35033239	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35089532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35225781	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35313782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36090882	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3817270	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3946758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3986364	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4864747	0.83[CHB][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap]
rs6420001	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6554095	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6554096	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6554103	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6554108	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6834099	0.82[EUR][1000 genomes]
rs6835629	0.82[EUR][1000 genomes]
rs6846569	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6847289	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71597836	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7678953	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7679743	0.88[ASN][1000 genomes]
rs7684450	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7684894	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7694840	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs980988	0.84[ASN][1000 genomes]
rs9968536	1.00[YRI][hapmap]
rs997832	0.91[CHB][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9992820	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9997358	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9997844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54320000-54353200	Weak transcription	Gastric	stomach
2	chr4:54327800-54362200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:54328200-54362000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:54328400-54362000	Weak transcription	Brain Angular Gyrus	brain
5	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
6	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
7	chr4:54333000-54363600	Weak transcription	Aorta	Aorta
8	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:54342800-54360600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:54343000-54385600	Weak transcription	Fetal Brain Female	brain
11	chr4:54343200-54376800	Weak transcription	Brain Anterior Caudate	brain
12	chr4:54343400-54352200	Weak transcription	Esophagus	oesophagus
13	chr4:54343400-54363000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:54343600-54352600	Weak transcription	Placenta	Placenta
15	chr4:54343600-54364600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:54345600-54352200	Weak transcription	Fetal Intestine Small	intestine
17	chr4:54345800-54355400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:54346000-54356400	Weak transcription	HSMMtube	muscle
19	chr4:54346400-54374000	Weak transcription	Right Ventricle	heart
20	chr4:54347600-54401800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr4:54347800-54355000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:54348000-54353400	Weak transcription	Pancreas	Pancrea
23	chr4:54348000-54355600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:54348000-54362200	Weak transcription	Fetal Intestine Large	intestine
25	chr4:54348200-54359600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr4:54349000-54360000	Weak transcription	Liver	Liver
27	chr4:54349600-54352200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:54349800-54351600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:54349800-54352200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr4:54350000-54353400	Enhancers	Ovary	ovary
31	chr4:54350400-54355200	Weak transcription	HMEC	breast
32	chr4:54350600-54351400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:54350800-54351600	Enhancers	Osteobl	bone
34	chr4:54350800-54352200	Enhancers	Fetal Stomach	stomach
35	chr4:54351000-54351400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:54351000-54352000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:54351000-54352000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:54351000-54352000	Enhancers	Adipose Nuclei	Adipose
39	chr4:54351200-54351400	Enhancers	Skeletal Muscle Male	skeletal muscle

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