Variant report

Variant	rs17082628
Chromosome Location	chr4:54230340-54230341
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54220179..54222765-chr4:54228443..54230623,2	K562	blood:
2	chr4:54225875..54227419-chr4:54229221..54231130,2	MCF-7	breast:

rs_ID	r²[population]
rs10517286	1.00[YRI][hapmap]
rs13125807	1.00[YRI][hapmap]
rs17081770	0.96[AFR][1000 genomes]
rs17082533	1.00[YRI][hapmap]
rs17082544	1.00[YRI][hapmap]
rs17082560	1.00[YRI][hapmap]
rs17082563	1.00[YRI][hapmap]
rs17082591	1.00[YRI][hapmap]
rs17082643	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17082702	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17082778	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9968536	1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54170600-54230600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:54188200-54231200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:54213800-54230400	Weak transcription	Fetal Kidney	kidney
4	chr4:54214000-54230800	Weak transcription	Aorta	Aorta
5	chr4:54214000-54231200	Weak transcription	Lung	lung
6	chr4:54214200-54230400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:54214200-54230800	Weak transcription	Brain Angular Gyrus	brain
8	chr4:54214200-54230800	Weak transcription	Brain Substantia Nigra	brain
9	chr4:54214200-54230800	Weak transcription	Fetal Lung	lung
10	chr4:54214200-54230800	Weak transcription	Right Ventricle	heart
11	chr4:54214200-54230800	Weak transcription	HSMMtube	muscle
12	chr4:54214200-54231000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr4:54214200-54231000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:54214200-54231200	Weak transcription	Spleen	Spleen
15	chr4:54218800-54230800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:54219400-54230400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr4:54219400-54230800	Weak transcription	Thymus	Thymus
18	chr4:54219800-54230400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr4:54220400-54230400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:54220400-54230800	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:54220600-54230800	Weak transcription	Fetal Thymus	thymus
22	chr4:54220800-54230400	Weak transcription	Fetal Intestine Large	intestine
23	chr4:54221200-54230800	Weak transcription	Fetal Intestine Small	intestine
24	chr4:54222400-54230800	Weak transcription	Psoas Muscle	Psoas
25	chr4:54224800-54233000	Active TSS	GM12878-XiMat	blood
26	chr4:54226200-54231200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr4:54226400-54230800	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr4:54226800-54231200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr4:54227200-54231000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr4:54227400-54230800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr4:54227600-54230400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:54227600-54230800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr4:54227800-54230800	Enhancers	Hela-S3	cervix
34	chr4:54227800-54231000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr4:54227800-54232600	Active TSS	NHLF	lung
36	chr4:54228000-54230800	Enhancers	Primary B cells from cord blood	blood
37	chr4:54228000-54231200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr4:54228200-54230800	Enhancers	Liver	Liver
39	chr4:54228400-54230800	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr4:54228400-54231200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr4:54228400-54231400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr4:54228600-54230400	Enhancers	Fetal Brain Male	brain
43	chr4:54228600-54230800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr4:54228600-54231200	Weak transcription	Esophagus	oesophagus
45	chr4:54228600-54231200	Weak transcription	Gastric	stomach
46	chr4:54228600-54231200	Weak transcription	Pancreas	Pancrea
47	chr4:54228600-54231400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:54228600-54231600	Flanking Active TSS	Dnd41	blood
49	chr4:54228800-54230400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:54228800-54231600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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