Variant report

Variant	rs36090882
Chromosome Location	chr4:54379392-54379393
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54378239..54380309-chr4:54383066..54385489,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10013573	0.88[ASN][1000 genomes]
rs10028214	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1014056	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11946199	0.80[ASN][1000 genomes]
rs12499401	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12501431	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13125807	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1351514	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17082659	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17082910	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2271557	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2292579	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34028346	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34173240	0.80[ASN][1000 genomes]
rs35089532	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35313782	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3817270	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3946758	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6420001	0.80[ASN][1000 genomes]
rs6554103	0.80[ASN][1000 genomes]
rs6554108	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6847289	0.80[ASN][1000 genomes]
rs71597836	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7678953	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7679743	0.80[ASN][1000 genomes]
rs7684450	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9992820	0.80[ASN][1000 genomes]
rs9997358	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9997844	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54343000-54385600	Weak transcription	Fetal Brain Female	brain
2	chr4:54347600-54401800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:54363200-54384200	Weak transcription	Esophagus	oesophagus
4	chr4:54363800-54384000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:54366600-54384200	Weak transcription	Pancreas	Pancrea
6	chr4:54372800-54388400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:54374400-54399000	Weak transcription	Fetal Intestine Large	intestine
8	chr4:54374400-54421000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:54374800-54393600	Weak transcription	Placenta	Placenta
10	chr4:54375000-54393600	Weak transcription	Gastric	stomach
11	chr4:54375000-54398800	Weak transcription	Fetal Intestine Small	intestine
12	chr4:54377600-54384400	Weak transcription	Right Atrium	heart
13	chr4:54377600-54412200	Weak transcription	Aorta	Aorta

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