Variant report

Variant	rs34028346
Chromosome Location	chr4:54368694-54368695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10008334	0.82[EUR][1000 genomes]
rs10012853	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10013573	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10028214	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1014056	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10517296	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11133267	0.81[EUR][1000 genomes]
rs11935822	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11942086	0.80[EUR][1000 genomes]
rs11944047	0.82[EUR][1000 genomes]
rs11946199	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12499401	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12501431	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12507723	0.82[EUR][1000 genomes]
rs13117240	0.82[EUR][1000 genomes]
rs13119372	0.82[EUR][1000 genomes]
rs13120051	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13125807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13130836	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1351514	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1399241	0.82[EUR][1000 genomes]
rs17082659	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17082910	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2128103	0.82[EUR][1000 genomes]
rs2271555	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2271557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2292579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34173240	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34317954	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35033239	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35089532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35225781	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35313782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36090882	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3817270	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3946758	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3986364	0.81[EUR][1000 genomes]
rs6420001	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6554095	0.82[EUR][1000 genomes]
rs6554096	0.82[EUR][1000 genomes]
rs6554103	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6554108	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6834099	0.82[EUR][1000 genomes]
rs6835629	0.82[EUR][1000 genomes]
rs6846569	0.82[EUR][1000 genomes]
rs6847289	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71597836	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7678953	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7679743	0.84[ASN][1000 genomes]
rs7684450	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7684894	0.82[EUR][1000 genomes]
rs7694840	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs980988	0.80[ASN][1000 genomes]
rs997832	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9992820	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9997358	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9997844	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54329600-54373600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:54329800-54374000	Weak transcription	Left Ventricle	heart
3	chr4:54333000-54374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:54343000-54385600	Weak transcription	Fetal Brain Female	brain
5	chr4:54343200-54376800	Weak transcription	Brain Anterior Caudate	brain
6	chr4:54346400-54374000	Weak transcription	Right Ventricle	heart
7	chr4:54347600-54401800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:54355200-54378600	Weak transcription	Fetal Brain Male	brain
9	chr4:54356600-54373400	Weak transcription	Right Atrium	heart
10	chr4:54362400-54374200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:54362800-54373000	Weak transcription	Liver	Liver
12	chr4:54362800-54376000	Weak transcription	Brain Angular Gyrus	brain
13	chr4:54363200-54373400	Weak transcription	Gastric	stomach
14	chr4:54363200-54384200	Weak transcription	Esophagus	oesophagus
15	chr4:54363800-54371400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:54363800-54371800	Weak transcription	Fetal Intestine Large	intestine
17	chr4:54363800-54384000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:54364200-54373200	Weak transcription	Adipose Nuclei	Adipose
19	chr4:54364200-54373200	Weak transcription	NHDF-Ad	bronchial
20	chr4:54364400-54371800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr4:54365200-54370600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:54365400-54374200	Weak transcription	Fetal Stomach	stomach
23	chr4:54365600-54372000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:54365600-54374000	Weak transcription	Aorta	Aorta
25	chr4:54365800-54374000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr4:54366600-54373200	Weak transcription	HSMM	muscle
27	chr4:54366600-54373400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:54366600-54373400	Weak transcription	Fetal Muscle Leg	muscle
29	chr4:54366600-54373800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr4:54366600-54384200	Weak transcription	Pancreas	Pancrea
31	chr4:54366800-54373400	Weak transcription	HSMMtube	muscle
32	chr4:54368000-54372600	Weak transcription	Fetal Intestine Small	intestine
33	chr4:54368000-54376600	Weak transcription	Ovary	ovary
34	chr4:54368200-54370800	Weak transcription	Placenta	Placenta
35	chr4:54368400-54368800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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