The 2.0 version of rSNPBase

Variant report

Variant rs28859306
Chromosome Location chr4:54333175-54333176
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54295600-54339400 Weak transcription Fetal Brain Male brain
2 chr4:54320000-54342000 Weak transcription Pancreas Pancrea
3 chr4:54320000-54353200 Weak transcription Gastric stomach
4 chr4:54321400-54341800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr4:54321800-54339800 Weak transcription Placenta Amnion Placenta Amnion
6 chr4:54327600-54347800 Weak transcription Fetal Muscle Trunk muscle
7 chr4:54327800-54334600 Weak transcription NHLF lung
8 chr4:54327800-54335200 Weak transcription HMEC breast
9 chr4:54327800-54341800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr4:54327800-54362200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr4:54328000-54339400 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr4:54328200-54362000 Weak transcription Brain Inferior Temporal Lobe brain
13 chr4:54328400-54333600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr4:54328400-54362000 Weak transcription Brain Angular Gyrus brain
15 chr4:54328600-54339600 Weak transcription Fetal Brain Female brain
16 chr4:54329600-54339000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr4:54329600-54341600 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr4:54329600-54341800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr4:54329600-54342000 Weak transcription NH-A brain
20 chr4:54329600-54351000 Weak transcription Adipose Nuclei Adipose
21 chr4:54329600-54373600 Weak transcription Brain Germinal Matrix brain
22 chr4:54329800-54341600 Weak transcription NHDF-Ad bronchial
23 chr4:54329800-54374000 Weak transcription Left Ventricle heart
24 chr4:54330200-54340800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr4:54330200-54341800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr4:54330400-54339200 Weak transcription Liver Liver
27 chr4:54331600-54334600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr4:54332000-54341800 Weak transcription Muscle Satellite Cultured Cells --
29 chr4:54332000-54342400 Weak transcription HSMM muscle
30 chr4:54332200-54333600 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
31 chr4:54332200-54333600 ZNF genes & repeats Fetal Intestine Small intestine
32 chr4:54332600-54333200 ZNF genes & repeats Fetal Intestine Large intestine
33 chr4:54332600-54333600 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr4:54332600-54333600 ZNF genes & repeats Duodenum Mucosa Duodenum
35 chr4:54332800-54333200 ZNF genes & repeats Placenta Placenta
36 chr4:54332800-54333600 ZNF genes & repeats Fetal Stomach stomach
37 chr4:54333000-54342800 Weak transcription Esophagus oesophagus
38 chr4:54333000-54363600 Weak transcription Aorta Aorta
39 chr4:54333000-54374800 Weak transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015