Variant report

Variant	rs17083354
Chromosome Location	chr5:93126475-93126476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92951201..92953104-chr5:93126115..93127883,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17083336	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17083351	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6866858	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1796354	chr5:93120618-93138786	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93077200-93130400	Weak transcription	Spleen	Spleen
2	chr5:93100600-93136200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:93101800-93136600	Weak transcription	HSMMtube	muscle
5	chr5:93106800-93132400	Weak transcription	Placenta	Placenta
6	chr5:93108600-93130600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:93108800-93127000	Weak transcription	Fetal Stomach	stomach
8	chr5:93108800-93130400	Weak transcription	Lung	lung
9	chr5:93108800-93137400	Weak transcription	Right Ventricle	heart
10	chr5:93109000-93136800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr5:93109200-93159600	Weak transcription	Thymus	Thymus
12	chr5:93109400-93136800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr5:93110000-93130600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr5:93110200-93136600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:93111400-93130200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr5:93111400-93130400	Weak transcription	Aorta	Aorta
17	chr5:93111400-93130400	Weak transcription	Fetal Intestine Large	intestine
18	chr5:93111400-93130400	Weak transcription	Fetal Muscle Leg	muscle
19	chr5:93111400-93136000	Weak transcription	Fetal Brain Male	brain
20	chr5:93111400-93142200	Weak transcription	Dnd41	blood
21	chr5:93111400-93159000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
23	chr5:93111800-93129400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr5:93111800-93130400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr5:93111800-93136800	Weak transcription	Liver	Liver
26	chr5:93111800-93136800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr5:93112000-93129800	Weak transcription	Adipose Nuclei	Adipose
28	chr5:93112000-93130400	Weak transcription	Ovary	ovary
29	chr5:93112200-93130400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr5:93114400-93129600	Weak transcription	Brain Anterior Caudate	brain
31	chr5:93114400-93136200	Weak transcription	Brain Germinal Matrix	brain
32	chr5:93117600-93127200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:93118000-93130400	Weak transcription	Primary B cells from cord blood	blood
34	chr5:93118200-93127200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:93118200-93137400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr5:93120200-93161800	Weak transcription	Primary B cells from peripheral blood	blood
37	chr5:93120400-93129600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr5:93120600-93127200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr5:93120600-93129400	Weak transcription	Primary T cells from cord blood	blood
40	chr5:93122800-93127000	Weak transcription	HepG2	liver
41	chr5:93124200-93127200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:93124200-93129400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr5:93124200-93130400	Weak transcription	Pancreas	Pancrea
44	chr5:93124400-93127600	Enhancers	NHLF	lung
45	chr5:93124600-93126800	Enhancers	Muscle Satellite Cultured Cells	--
46	chr5:93124600-93126800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr5:93124800-93126600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr5:93124800-93126600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr5:93124800-93126600	Enhancers	Osteobl	bone
50	chr5:93125000-93128600	Weak transcription	NHEK	skin

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