Variant report

Variant	rs6866858
Chromosome Location	chr5:93154448-93154449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17083305	0.86[YRI][hapmap]
rs17083309	0.86[YRI][hapmap]
rs17083336	1.00[AMR][1000 genomes]
rs17083351	1.00[AMR][1000 genomes]
rs17083354	1.00[AMR][1000 genomes]
rs17083426	0.89[ASW][hapmap];1.00[MKK][hapmap]
rs17314172	0.89[ASW][hapmap];0.93[YRI][hapmap]
rs6897803	0.81[ASW][hapmap];0.93[YRI][hapmap]
rs7701468	0.89[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:93109200-93159600	Weak transcription	Thymus	Thymus
3	chr5:93111400-93159000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
5	chr5:93120200-93161800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr5:93131200-93179200	Weak transcription	Ovary	ovary
7	chr5:93132600-93157800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:93137000-93165400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr5:93137000-93168400	Weak transcription	Pancreas	Pancrea
10	chr5:93137000-93168600	Weak transcription	Fetal Stomach	stomach
11	chr5:93137200-93160600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr5:93137200-93160800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr5:93137200-93166800	Weak transcription	HSMM	muscle
14	chr5:93137600-93180400	Weak transcription	Fetal Lung	lung
15	chr5:93142000-93157600	Weak transcription	Primary T cells from cord blood	blood
16	chr5:93143200-93180000	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr5:93146400-93155200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr5:93146800-93180200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr5:93147400-93155400	Weak transcription	Fetal Intestine Small	intestine
20	chr5:93147400-93179800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr5:93148800-93160400	Weak transcription	Adipose Nuclei	Adipose
22	chr5:93149400-93157600	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr5:93149400-93160400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:93149400-93161000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr5:93149600-93156400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:93149800-93156400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:93150000-93156400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr5:93151800-93164800	Weak transcription	Primary B cells from cord blood	blood
29	chr5:93152400-93155200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr5:93153800-93160200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr5:93153800-93166800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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