Variant report

Variant	rs17314172
Chromosome Location	chr5:93167165-93167166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17083305	0.93[YRI][hapmap]
rs17083309	0.93[YRI][hapmap]
rs17083328	0.86[LWK][hapmap]
rs6862738	0.85[YRI][hapmap]
rs6866858	0.89[ASW][hapmap];0.93[YRI][hapmap]
rs6897803	0.90[ASW][hapmap];0.96[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17314172	CCL1	trans	lymphoblastoid	seeQTL

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
2	chr5:93131200-93179200	Weak transcription	Ovary	ovary
3	chr5:93137000-93168400	Weak transcription	Pancreas	Pancrea
4	chr5:93137000-93168600	Weak transcription	Fetal Stomach	stomach
5	chr5:93137600-93180400	Weak transcription	Fetal Lung	lung
6	chr5:93143200-93180000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr5:93146800-93180200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr5:93147400-93179800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:93156600-93169200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr5:93158000-93170400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:93158400-93168000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr5:93161200-93167600	Weak transcription	HSMMtube	muscle
13	chr5:93161200-93168800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:93162000-93215000	Weak transcription	Aorta	Aorta
15	chr5:93162200-93179600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr5:93163800-93179800	Weak transcription	Fetal Muscle Leg	muscle
17	chr5:93164600-93180400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr5:93164800-93167800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:93165000-93179800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr5:93165200-93167800	Weak transcription	Brain Anterior Caudate	brain
21	chr5:93165400-93168200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr5:93165800-93167200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr5:93166200-93167400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:93166400-93180400	Weak transcription	Primary B cells from cord blood	blood
25	chr5:93166600-93167400	Strong transcription	Primary T cells from cord blood	blood
26	chr5:93166600-93168000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:93166800-93167400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:93166800-93167600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:93166800-93167800	Enhancers	NHEK	skin
30	chr5:93166800-93168000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:93166800-93168000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr5:93166800-93168000	Enhancers	HMEC	breast
33	chr5:93166800-93168200	Enhancers	HSMM	muscle
34	chr5:93166800-93168200	Enhancers	NHDF-Ad	bronchial
35	chr5:93166800-93168400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:93166800-93168400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr5:93167000-93168000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:93167000-93168000	Enhancers	Hela-S3	cervix
39	chr5:93167000-93168000	Enhancers	NH-A	brain
40	chr5:93167000-93168000	Enhancers	Osteobl	bone

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