Variant report
| Variant | rs17084182 |
|---|---|
| Chromosome Location | chr4:55222472-55222473 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:55214457..55216740-chr4:55222463..55224435,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10018115 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10019495 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10022296 | 1.00[EUR][1000 genomes] |
| rs10517330 | 0.85[AMR][1000 genomes] |
| rs11936787 | 1.00[EUR][1000 genomes] |
| rs17084190 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17084432 | 1.00[EUR][1000 genomes] |
| rs17084439 | 1.00[EUR][1000 genomes] |
| rs1863343 | 1.00[EUR][1000 genomes] |
| rs1876481 | 1.00[EUR][1000 genomes] |
| rs2033053 | 1.00[EUR][1000 genomes] |
| rs2166020 | 1.00[CHB][hapmap] |
| rs28513544 | 1.00[EUR][1000 genomes] |
| rs28548789 | 1.00[EUR][1000 genomes] |
| rs28550366 | 1.00[EUR][1000 genomes] |
| rs28753670 | 1.00[EUR][1000 genomes] |
| rs35111648 | 1.00[EUR][1000 genomes] |
| rs4241980 | 1.00[EUR][1000 genomes] |
| rs57087683 | 1.00[EUR][1000 genomes] |
| rs6815523 | 1.00[EUR][1000 genomes] |
| rs6842725 | 1.00[EUR][1000 genomes] |
| rs73155490 | 1.00[EUR][1000 genomes] |
| rs73157485 | 1.00[EUR][1000 genomes] |
| rs73159412 | 1.00[EUR][1000 genomes] |
| rs7438666 | 1.00[EUR][1000 genomes] |
| rs7675121 | 1.00[EUR][1000 genomes] |
| rs973924 | 1.00[EUR][1000 genomes] |
| rs9995779 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008793 | chr4:55060925-55535807 | Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv537098 | chr4:55060925-55535807 | Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv999400 | chr4:55143598-55776995 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:55222000-55222600 | Enhancers | Fetal Brain Female | brain |
