Variant report
Variant | rs11936787 |
---|---|
Chromosome Location | chr4:55272166-55272167 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10017829 | 1.00[EUR][1000 genomes] |
rs10018115 | 1.00[EUR][1000 genomes] |
rs10019495 | 1.00[EUR][1000 genomes] |
rs10022296 | 1.00[EUR][1000 genomes] |
rs11934042 | 1.00[AMR][1000 genomes] |
rs11940626 | 1.00[AMR][1000 genomes] |
rs17084182 | 1.00[EUR][1000 genomes] |
rs17084432 | 1.00[EUR][1000 genomes] |
rs17084439 | 1.00[EUR][1000 genomes] |
rs17084451 | 1.00[EUR][1000 genomes] |
rs1876481 | 1.00[EUR][1000 genomes] |
rs2135969 | 1.00[AMR][1000 genomes] |
rs218272 | 1.00[AMR][1000 genomes] |
rs218274 | 1.00[EUR][1000 genomes] |
rs218275 | 1.00[EUR][1000 genomes] |
rs218276 | 1.00[EUR][1000 genomes] |
rs218277 | 1.00[EUR][1000 genomes] |
rs28415087 | 1.00[EUR][1000 genomes] |
rs28513544 | 1.00[EUR][1000 genomes] |
rs28548789 | 1.00[EUR][1000 genomes] |
rs28550366 | 1.00[EUR][1000 genomes] |
rs28753670 | 1.00[EUR][1000 genomes] |
rs35111648 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs56744789 | 1.00[AMR][1000 genomes] |
rs58974096 | 1.00[AMR][1000 genomes] |
rs59971610 | 1.00[AMR][1000 genomes] |
rs6815523 | 1.00[EUR][1000 genomes] |
rs6842725 | 1.00[EUR][1000 genomes] |
rs73148424 | 1.00[AMR][1000 genomes] |
rs73150417 | 1.00[AMR][1000 genomes] |
rs73155490 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73157485 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73157627 | 1.00[AMR][1000 genomes] |
rs73159412 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73159433 | 1.00[AMR][1000 genomes] |
rs73159438 | 1.00[AMR][1000 genomes] |
rs7675121 | 1.00[EUR][1000 genomes] |
rs973924 | 1.00[EUR][1000 genomes] |
rs9995779 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1008793 | chr4:55060925-55535807 | Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
2 | nsv537098 | chr4:55060925-55535807 | Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
3 | nsv999400 | chr4:55143598-55776995 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
4 | nsv997430 | chr4:55253397-55529288 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv4344 | chr4:55260607-55305235 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:55267600-55275200 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
2 | chr4:55269400-55273800 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
3 | chr4:55269400-55274600 | Weak transcription | Adipose Nuclei | Adipose |