Variant report
| Variant | rs73157627 |
|---|---|
| Chromosome Location | chr4:55316855-55316856 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| ENSG00000251264 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11934042 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11936787 | 1.00[AMR][1000 genomes] |
| rs11940626 | 1.00[AMR][1000 genomes] |
| rs2135969 | 1.00[AMR][1000 genomes] |
| rs218272 | 1.00[AMR][1000 genomes] |
| rs35111648 | 1.00[AMR][1000 genomes] |
| rs56744789 | 1.00[AMR][1000 genomes] |
| rs58974096 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59971610 | 1.00[AMR][1000 genomes] |
| rs61529553 | 0.91[AFR][1000 genomes] |
| rs73148424 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73150417 | 1.00[AMR][1000 genomes] |
| rs73155466 | 0.91[AFR][1000 genomes] |
| rs73157485 | 1.00[AMR][1000 genomes] |
| rs73159412 | 1.00[AMR][1000 genomes] |
| rs73159433 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73159438 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008793 | chr4:55060925-55535807 | Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv537098 | chr4:55060925-55535807 | Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv999400 | chr4:55143598-55776995 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv997430 | chr4:55253397-55529288 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
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Chromatin state (count:0 , 50 per page) page:
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