Variant report

Variant	rs17084375
Chromosome Location	chr5:94378377-94378378
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72777390	0.94[AFR][1000 genomes]
rs72777398	0.94[AFR][1000 genomes]
rs7708767	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94372800-94379000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:94374800-94378600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:94375000-94378400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:94376600-94378400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:94376600-94378600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:94376600-94379000	Weak transcription	Primary T cells from cord blood	blood
8	chr5:94377600-94378400	Enhancers	Stomach Mucosa	stomach
9	chr5:94377800-94382000	Enhancers	HUVEC	blood vessel
10	chr5:94378000-94379400	Weak transcription	Adipose Nuclei	Adipose
11	chr5:94378200-94378800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr5:94378200-94380000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:94378200-94382000	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links