Variant report
| Variant | rs17084568 |
|---|---|
| Chromosome Location | chr5:94625644-94625645 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000175471 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs17084577 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs58576599 | 0.91[EUR][1000 genomes] |
| rs58831977 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59355328 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs73142082 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73142086 | 0.91[EUR][1000 genomes] |
| rs73142095 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7724147 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432752 | chr5:94524244-94691044 | Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
