Variant report

Variant	rs17084933
Chromosome Location	chr5:94942780-94942781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94941211..94943243-chr5:94944758..94946642,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10055673	0.94[CHD][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs10063417	1.00[CHD][hapmap]
rs10064546	0.94[CHD][hapmap];0.94[TSI][hapmap]
rs10491246	0.85[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs10515228	1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1062073	1.00[CHD][hapmap]
rs10866765	1.00[CHD][hapmap]
rs11135429	1.00[CHD][hapmap]
rs11950190	1.00[CHD][hapmap]
rs13355280	1.00[CHD][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs17084852	1.00[CHD][hapmap]
rs17084867	1.00[CHD][hapmap]
rs17084873	1.00[CHD][hapmap]
rs17084904	0.81[ASN][1000 genomes]
rs17084909	0.82[EUR][1000 genomes]
rs17084927	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2278224	1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs2303649	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2303650	1.00[CHD][hapmap]
rs3776875	1.00[CHD][hapmap]
rs3822616	1.00[CHD][hapmap]
rs3822617	1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs62365862	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6556874	1.00[CHD][hapmap]
rs6866194	1.00[CHD][hapmap]
rs6878974	1.00[CHD][hapmap]
rs6880676	0.81[ASN][1000 genomes]
rs6881618	1.00[CHD][hapmap]
rs6891486	1.00[CHD][hapmap]
rs7709828	1.00[CHD][hapmap]
rs7710228	0.94[CHD][hapmap]
rs7723951	1.00[CHD][hapmap]
rs7724683	1.00[CHD][hapmap]
rs7737266	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs890739	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94912800-94943400	Weak transcription	Fetal Intestine Small	intestine
2	chr5:94927000-94948800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:94927000-94954200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr5:94927000-94954200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:94927600-94951800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:94927800-94952200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:94928200-94952200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:94928400-94948600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:94933600-94948600	Weak transcription	Pancreas	Pancrea
10	chr5:94937000-94943400	Weak transcription	Fetal Muscle Leg	muscle
11	chr5:94937200-94948200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:94937400-94945400	Weak transcription	Fetal Lung	lung
13	chr5:94937400-94948600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:94937600-94952200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:94937800-94943200	Weak transcription	Primary B cells from cord blood	blood
16	chr5:94937800-94943400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr5:94937800-94945600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr5:94938000-94943000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr5:94938000-94948400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:94938000-94952400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr5:94938200-94954400	Weak transcription	Primary T cells from cord blood	blood
22	chr5:94938800-94948400	Weak transcription	Dnd41	blood
23	chr5:94941600-94944400	Weak transcription	Esophagus	oesophagus

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