Variant report

Variant	rs7710228
Chromosome Location	chr5:94773898-94773899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94772779..94775634-chr5:94777609..94779631,2	K562	blood:

Extended variants
information (count: 136 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10036119	0.88[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10036691	0.89[ASN][1000 genomes]
rs10040367	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10045714	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10055673	0.88[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs10056208	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10056278	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10057391	0.87[ASN][1000 genomes]
rs10057420	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10063417	0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.92[ASN][1000 genomes]
rs10064546	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10070711	0.88[ASN][1000 genomes]
rs10075022	0.88[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs10077070	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10223061	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10223134	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10223147	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10476648	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10476649	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10476652	0.88[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs10476653	0.89[ASN][1000 genomes]
rs10476654	0.89[ASN][1000 genomes]
rs10491246	0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.83[ASN][1000 genomes]
rs10515228	0.88[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs1062073	0.86[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1062075	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1062077	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1062083	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10866765	0.84[ASW][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.91[ASN][1000 genomes]
rs11135426	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11135429	0.88[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.83[TSI][hapmap];0.88[ASN][1000 genomes]
rs1139111	0.88[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1139114	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11948407	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11948489	0.88[ASN][1000 genomes]
rs11949044	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11950190	0.88[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11953160	0.82[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs11953633	0.88[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11958720	0.91[ASN][1000 genomes]
rs11959401	0.91[ASN][1000 genomes]
rs12054689	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12054916	0.90[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12055264	0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs12189111	0.88[ASN][1000 genomes]
rs13355280	0.88[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs17084769	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17084779	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17084816	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17084817	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17084839	0.88[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17084852	0.88[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.92[ASN][1000 genomes]
rs17084867	0.88[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.91[ASN][1000 genomes]
rs17084873	0.88[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.88[ASN][1000 genomes]
rs17084904	0.86[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs17084909	0.88[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs17084927	0.94[CHD][hapmap];0.92[JPT][hapmap]
rs1833894	0.89[EUR][1000 genomes]
rs2042871	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2278224	0.88[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs2303649	0.88[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs2303650	0.86[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap];0.91[ASN][1000 genomes]
rs28376538	0.87[ASN][1000 genomes]
rs28491117	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3776875	0.88[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3776876	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3822616	0.88[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3822617	0.88[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs3822618	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3849752	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3849753	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3849754	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3849755	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3931769	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55679859	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58373522	0.88[ASN][1000 genomes]
rs58405178	0.88[ASN][1000 genomes]
rs60954465	0.91[ASN][1000 genomes]
rs6556874	0.89[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6556876	0.88[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs6859731	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs6866194	0.88[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.88[ASN][1000 genomes]
rs6878974	0.86[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.91[ASN][1000 genomes]
rs6880676	0.88[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs6881618	0.88[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.89[ASN][1000 genomes]
rs6891486	0.88[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6897586	0.86[ASN][1000 genomes]
rs73141954	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73143969	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73143972	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73143974	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73145973	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73145974	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73145991	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73777201	0.85[ASN][1000 genomes]
rs73777219	0.88[ASN][1000 genomes]
rs73777221	0.88[ASN][1000 genomes]
rs73778853	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7703285	0.88[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7703948	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7705631	0.84[ASW][hapmap];0.86[YRI][hapmap]
rs7705862	0.88[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7706027	0.85[EUR][1000 genomes]
rs7706837	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7707851	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7707854	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7709709	0.91[ASN][1000 genomes]
rs7709828	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7715350	0.91[ASN][1000 genomes]
rs7722225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7722969	0.88[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7723951	0.88[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7724147	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7724683	0.88[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7724730	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7725190	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7725219	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7725419	0.95[ASN][1000 genomes]
rs7727453	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7727455	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7727608	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7733476	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7737266	0.88[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs890739	0.88[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.88[ASN][1000 genomes]
rs9285017	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9314142	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9314143	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9314144	0.87[ASN][1000 genomes]
rs9314145	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9314146	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9314147	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9885158	0.88[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs9885192	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9885291	0.88[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9885310	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7710228	C5orf27	cis	parietal	SCAN
rs7710228	TTC37	cis	Whole Blood	GTEx
rs7710228	TTC37	cis	parietal	SCAN
rs7710228	TTC37	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94768600-94776000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:94771200-94775600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:94773400-94775400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:94773600-94775600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:94773800-94774000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr5:94773800-94774000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:94773800-94774200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:94773800-94775200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:94773800-94775600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links