Variant report

Variant	rs7706027
Chromosome Location	chr5:94810950-94810951
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94810168..94812031-chr5:94812171..94814242,2	MCF-7	breast:

Extended variants
information (count: 117 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10036119	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10036691	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10040367	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10045714	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10056208	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10056278	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10057420	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10063417	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10070711	0.86[EUR][1000 genomes]
rs10075022	0.90[EUR][1000 genomes]
rs10077070	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10223061	0.82[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10223134	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10223147	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10476648	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10476649	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10476652	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10476653	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10476654	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10491246	0.89[EUR][1000 genomes]
rs1062073	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1062075	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1062077	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1062083	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10866765	0.99[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11135426	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11135429	0.90[EUR][1000 genomes]
rs1139111	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1139114	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11948407	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11948489	0.92[EUR][1000 genomes]
rs11949044	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11950190	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11953160	0.92[EUR][1000 genomes]
rs11953633	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11958720	0.93[EUR][1000 genomes]
rs11959401	0.93[EUR][1000 genomes]
rs12054689	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12054916	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12055264	0.90[EUR][1000 genomes]
rs12189111	0.90[EUR][1000 genomes]
rs17084769	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs17084779	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs17084816	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs17084817	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs17084839	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17084852	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17084867	0.92[EUR][1000 genomes]
rs17084873	0.92[EUR][1000 genomes]
rs1833894	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2042871	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2303650	0.87[EUR][1000 genomes]
rs28491117	0.84[EUR][1000 genomes]
rs3776875	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3776876	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3822616	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3822618	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3849752	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3849753	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3849754	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3849755	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3931769	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs55679859	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs58373522	0.90[EUR][1000 genomes]
rs58405178	0.90[EUR][1000 genomes]
rs60954465	0.93[EUR][1000 genomes]
rs6556874	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6556876	0.90[EUR][1000 genomes]
rs6866194	0.90[EUR][1000 genomes]
rs6878974	0.93[EUR][1000 genomes]
rs6881618	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6891486	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6897586	0.90[EUR][1000 genomes]
rs73141954	0.84[EUR][1000 genomes]
rs73143969	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73143972	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs73143974	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs73145973	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73145974	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs73145991	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs73777201	0.89[EUR][1000 genomes]
rs73777219	0.92[EUR][1000 genomes]
rs73777221	0.93[EUR][1000 genomes]
rs73778853	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7703285	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7703948	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7705862	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7706837	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7707851	0.93[EUR][1000 genomes]
rs7707854	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7709709	0.93[EUR][1000 genomes]
rs7709828	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7710228	0.85[EUR][1000 genomes]
rs7715350	0.93[EUR][1000 genomes]
rs7722969	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7723951	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7724147	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7724683	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7724730	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7725190	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7725219	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7727453	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7727455	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7727608	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7733476	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs890739	0.92[EUR][1000 genomes]
rs9285017	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9314142	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9314143	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9314145	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9314146	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9314147	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9885192	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9885291	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9885310	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv598954	chr5:94783175-94859599	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7706027	TTC37	cis	Whole Blood	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94788400-94811200	Weak transcription	Small Intestine	intestine
2	chr5:94788800-94822000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:94791800-94811200	Weak transcription	Hela-S3	cervix
4	chr5:94792600-94817800	Weak transcription	Brain Substantia Nigra	brain
5	chr5:94792600-94821800	Weak transcription	Right Ventricle	heart
6	chr5:94794800-94817600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:94795200-94826600	Weak transcription	NHEK	skin
8	chr5:94795400-94814000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr5:94797000-94817000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:94797000-94819200	Weak transcription	HepG2	liver
11	chr5:94797200-94811200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:94799200-94811000	Weak transcription	Ovary	ovary
13	chr5:94799200-94811200	Weak transcription	Brain Angular Gyrus	brain
14	chr5:94799200-94811200	Weak transcription	Colonic Mucosa	Colon
15	chr5:94799200-94811200	Weak transcription	Colon Smooth Muscle	Colon
16	chr5:94799200-94812200	Weak transcription	Fetal Kidney	kidney
17	chr5:94799200-94821600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr5:94799200-94834800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:94802000-94821600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr5:94802200-94813600	Weak transcription	HMEC	breast
21	chr5:94802200-94816200	Weak transcription	Fetal Brain Male	brain
22	chr5:94804200-94817800	Weak transcription	Fetal Heart	heart
23	chr5:94804600-94811200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr5:94804600-94811400	Weak transcription	A549	lung
25	chr5:94804600-94816600	Weak transcription	Brain Germinal Matrix	brain
26	chr5:94804600-94817000	Weak transcription	GM12878-XiMat	blood
27	chr5:94804600-94821600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr5:94804600-94823000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr5:94804800-94811400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr5:94804800-94816400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr5:94804800-94816600	Weak transcription	K562	blood
32	chr5:94805200-94811000	Weak transcription	Fetal Brain Female	brain
33	chr5:94805400-94811000	Weak transcription	Brain Anterior Caudate	brain
34	chr5:94805400-94812400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr5:94805600-94811000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr5:94805600-94811000	Weak transcription	Brain Hippocampus Middle	brain
37	chr5:94805600-94811200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:94805600-94811200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr5:94805600-94811200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr5:94805600-94811200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr5:94805600-94811400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr5:94805600-94811400	Weak transcription	NHDF-Ad	bronchial
43	chr5:94806200-94811200	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr5:94806200-94811800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr5:94807400-94812400	Strong transcription	Primary T cells from cord blood	blood
46	chr5:94807800-94817000	Strong transcription	Primary B cells from cord blood	blood
47	chr5:94808000-94811000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr5:94808000-94811200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr5:94808000-94816600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr5:94808000-94821600	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links