Variant report

Variant	rs73777219
Chromosome Location	chr5:94884955-94884956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94869385..94872836-chr5:94884055..94887302,3	K562	blood:

Variant related genes	Relation type
ENSG00000198677	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10036119	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10036691	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10040367	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10045714	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10055673	0.94[ASN][1000 genomes]
rs10056208	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10056278	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10057391	0.94[ASN][1000 genomes]
rs10057420	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10063417	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10070711	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075022	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077070	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10223061	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10223134	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10223147	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10476648	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10476649	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10476652	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10476653	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10476654	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10491246	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10515228	0.97[ASN][1000 genomes]
rs1062073	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1062075	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1062077	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1062083	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10866765	0.94[ASN][1000 genomes]
rs11135426	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11135429	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1139111	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1139114	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11948407	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11948489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949044	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11950190	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11953160	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11953633	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11958720	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11959401	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12054689	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12054916	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12055264	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189111	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13355280	0.94[ASN][1000 genomes]
rs17084769	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084779	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084816	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084817	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084839	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084852	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084867	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17084873	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084904	0.97[ASN][1000 genomes]
rs17084909	0.95[ASN][1000 genomes]
rs17084927	0.92[ASN][1000 genomes]
rs1833894	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2042871	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2278224	0.94[ASN][1000 genomes]
rs2303649	0.97[ASN][1000 genomes]
rs2303650	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28376538	0.94[ASN][1000 genomes]
rs28491117	0.88[ASN][1000 genomes]
rs3776875	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3776876	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3822616	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3822617	0.94[ASN][1000 genomes]
rs3822618	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3849752	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3849753	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3849754	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3849755	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3931769	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55679859	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58373522	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58405178	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60954465	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62365862	0.81[ASN][1000 genomes]
rs6556874	0.95[ASN][1000 genomes]
rs6556876	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866194	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6878974	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6880676	0.97[ASN][1000 genomes]
rs6881618	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6891486	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6897586	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73141954	0.88[ASN][1000 genomes]
rs73143969	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73143972	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73143974	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73145973	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73145974	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73145991	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73777201	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73777221	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778853	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7703285	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7703948	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7705862	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7706027	0.92[EUR][1000 genomes]
rs7706837	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7707851	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7707854	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7709709	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7709828	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7710228	0.88[ASN][1000 genomes]
rs7715350	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7722225	0.86[ASN][1000 genomes]
rs7722969	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7723951	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7724147	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7724683	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7724730	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7725190	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7725219	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7725419	0.86[ASN][1000 genomes]
rs7727453	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7727455	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7727608	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7733476	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7737266	0.97[ASN][1000 genomes]
rs890739	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285017	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9314142	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9314143	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9314144	0.94[ASN][1000 genomes]
rs9314145	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9314146	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9314147	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9885158	0.94[ASN][1000 genomes]
rs9885192	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9885291	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9885310	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73777219	TTC37	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94811000-94889400	Weak transcription	Stomach Mucosa	stomach
2	chr5:94825000-94886200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr5:94825400-94886400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr5:94826000-94886400	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:94826800-94886400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr5:94827200-94889600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:94828800-94885800	Strong transcription	Fetal Thymus	thymus
8	chr5:94841800-94886000	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr5:94842200-94886000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr5:94847400-94890000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:94849200-94890000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:94853800-94890000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:94864400-94889400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr5:94865200-94889400	Weak transcription	Esophagus	oesophagus
15	chr5:94865200-94890000	Weak transcription	Aorta	Aorta
16	chr5:94867400-94886000	Strong transcription	Adipose Nuclei	Adipose
17	chr5:94868800-94886000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:94869400-94889000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:94870000-94886200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:94870200-94885800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:94870200-94889000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:94870400-94885000	Strong transcription	NH-A	brain
23	chr5:94870400-94886000	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr5:94870400-94886000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:94871400-94886000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr5:94871400-94886400	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr5:94874400-94885800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr5:94874400-94886000	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr5:94874600-94885600	Strong transcription	Placenta	Placenta
30	chr5:94875600-94886000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr5:94876200-94888800	Strong transcription	NHLF	lung
32	chr5:94877600-94889600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr5:94878400-94889400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr5:94879400-94885000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr5:94879600-94886400	Strong transcription	HSMM	muscle
36	chr5:94879600-94886600	Strong transcription	Osteobl	bone
37	chr5:94879600-94889600	Weak transcription	Fetal Intestine Small	intestine
38	chr5:94879800-94886000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr5:94879800-94886800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr5:94880000-94885400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:94880000-94885400	Strong transcription	Duodenum Mucosa	Duodenum
42	chr5:94880000-94886000	Strong transcription	Liver	Liver
43	chr5:94880000-94886000	Strong transcription	NHDF-Ad	bronchial
44	chr5:94880000-94886200	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr5:94880000-94887600	Weak transcription	Small Intestine	intestine
46	chr5:94880200-94885400	Strong transcription	Colon Smooth Muscle	Colon
47	chr5:94880200-94885800	Strong transcription	HMEC	breast
48	chr5:94880200-94886000	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr5:94880400-94885200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr5:94880400-94886000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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