Variant report

Variant	rs73777221
Chromosome Location	chr5:94888264-94888265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 134 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10036119	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10036691	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10040367	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10045714	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10055673	0.94[ASN][1000 genomes]
rs10056208	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10056278	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10057391	0.94[ASN][1000 genomes]
rs10057420	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10063417	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10070711	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075022	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077070	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10223061	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10223134	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10223147	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10476648	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10476649	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10476652	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10476653	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10476654	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10491246	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10515228	0.97[ASN][1000 genomes]
rs1062073	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1062075	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1062077	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1062083	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10866765	0.94[ASN][1000 genomes]
rs11135426	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11135429	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1139111	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1139114	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11948407	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11948489	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949044	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11950190	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11953160	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11953633	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11958720	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11959401	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12054689	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12054916	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12055264	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189111	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13355280	0.94[ASN][1000 genomes]
rs17084769	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084779	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084816	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084817	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084839	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084852	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084867	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17084873	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084904	0.97[ASN][1000 genomes]
rs17084909	0.95[ASN][1000 genomes]
rs17084927	0.92[ASN][1000 genomes]
rs1833894	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2042871	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2278224	0.94[ASN][1000 genomes]
rs2303649	0.97[ASN][1000 genomes]
rs2303650	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28376538	0.94[ASN][1000 genomes]
rs28491117	0.88[ASN][1000 genomes]
rs3776875	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3776876	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3822616	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3822617	0.94[ASN][1000 genomes]
rs3822618	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3849752	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3849753	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3849754	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3849755	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3931769	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55679859	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58373522	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58405178	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60954465	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62365862	0.81[ASN][1000 genomes]
rs6556874	0.95[ASN][1000 genomes]
rs6556876	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866194	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6878974	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6880676	0.97[ASN][1000 genomes]
rs6881618	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6891486	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6897586	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73141954	0.88[ASN][1000 genomes]
rs73143969	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73143972	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73143974	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73145973	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73145974	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73145991	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73777201	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73777219	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778853	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7703285	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7703948	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7705862	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7706027	0.93[EUR][1000 genomes]
rs7706837	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7707851	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7707854	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7709709	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7709828	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7710228	0.88[ASN][1000 genomes]
rs7715350	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7722225	0.86[ASN][1000 genomes]
rs7722969	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7723951	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7724147	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7724683	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7724730	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7725190	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7725219	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7725419	0.86[ASN][1000 genomes]
rs7727453	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7727455	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7727608	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7733476	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7737266	0.97[ASN][1000 genomes]
rs890739	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285017	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9314142	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9314143	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9314144	0.94[ASN][1000 genomes]
rs9314145	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9314146	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9314147	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9885158	0.94[ASN][1000 genomes]
rs9885192	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9885291	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9885310	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73777221	TTC37	cis	Whole Blood	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94811000-94889400	Weak transcription	Stomach Mucosa	stomach
2	chr5:94827200-94889600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:94847400-94890000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:94849200-94890000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:94853800-94890000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:94864400-94889400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:94865200-94889400	Weak transcription	Esophagus	oesophagus
8	chr5:94865200-94890000	Weak transcription	Aorta	Aorta
9	chr5:94869400-94889000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:94870200-94889000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:94876200-94888800	Strong transcription	NHLF	lung
12	chr5:94877600-94889600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:94878400-94889400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:94879600-94889600	Weak transcription	Fetal Intestine Small	intestine
15	chr5:94881000-94889600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:94881400-94889400	Weak transcription	Brain Substantia Nigra	brain
17	chr5:94881400-94889600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr5:94881600-94889200	Weak transcription	Fetal Brain Male	brain
19	chr5:94881600-94889600	Weak transcription	Thymus	Thymus
20	chr5:94881800-94889400	Weak transcription	Colonic Mucosa	Colon
21	chr5:94881800-94889400	Weak transcription	Spleen	Spleen
22	chr5:94882200-94888600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr5:94882400-94889400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:94882400-94889400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr5:94882400-94889400	Weak transcription	Lung	lung
26	chr5:94882400-94889400	Weak transcription	Pancreas	Pancrea
27	chr5:94882400-94889400	Weak transcription	Right Ventricle	heart
28	chr5:94882400-94889600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr5:94882400-94889600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:94882400-94889600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr5:94882400-94889600	Weak transcription	Fetal Stomach	stomach
32	chr5:94883000-94889200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr5:94883000-94889400	Weak transcription	Gastric	stomach
34	chr5:94883000-94889400	Weak transcription	K562	blood
35	chr5:94883000-94889600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr5:94883000-94889600	Weak transcription	Left Ventricle	heart
37	chr5:94883000-94889600	Weak transcription	HSMMtube	muscle
38	chr5:94883000-94890000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr5:94883200-94889400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr5:94883200-94889600	Weak transcription	Fetal Muscle Leg	muscle
41	chr5:94883200-94889600	Weak transcription	Ovary	ovary
42	chr5:94883400-94888600	Weak transcription	Hela-S3	cervix
43	chr5:94883600-94889400	Weak transcription	HUVEC	blood vessel
44	chr5:94883600-94889600	Weak transcription	A549	lung
45	chr5:94885000-94889400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr5:94885000-94889400	Weak transcription	NH-A	brain
47	chr5:94885200-94889400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr5:94885200-94889400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr5:94885200-94889600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr5:94885200-94889600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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