Variant report

Variant	rs6859731
Chromosome Location	chr5:94864378-94864379
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10036119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10036691	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10040367	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10045714	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10055673	0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs10056208	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10056278	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10057391	0.92[ASN][1000 genomes]
rs10057420	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10063417	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10064546	0.92[JPT][hapmap]
rs10070711	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10075022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10077070	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10223061	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10223134	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10223147	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10476648	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10476649	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10476652	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491246	0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10515228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1062073	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1062075	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1062077	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1062083	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10866765	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11135426	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11135429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1139111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1139114	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11948407	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11948489	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11949044	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11950190	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11953160	1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953633	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11958720	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11959401	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12054689	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12054916	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12055264	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12189111	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13355280	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17084769	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17084779	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17084816	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17084817	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17084839	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17084852	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17084867	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17084873	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17084904	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17084909	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17084927	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1833894	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2042871	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2278224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2303649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2303650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28376538	0.92[ASN][1000 genomes]
rs28491117	0.89[ASN][1000 genomes]
rs2881773	0.86[AFR][1000 genomes]
rs3776875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3776876	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3822616	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3822617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3822618	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3849752	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3849753	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3849754	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3849755	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3931769	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55679859	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58373522	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58405178	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60954465	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6556874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6556876	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6866194	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6878974	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6880676	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6881618	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6891486	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6897586	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73141954	0.89[ASN][1000 genomes]
rs73143969	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73143972	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73143974	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73145973	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73145974	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73145991	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73777201	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73777219	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73777221	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73778853	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7703285	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7703948	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7705862	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7706027	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7706837	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7707851	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7707854	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7709709	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7709828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7710228	0.88[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs7715350	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7722225	0.88[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs7722969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7723951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7724147	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7724683	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7724730	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7725190	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7725219	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7725419	0.85[ASN][1000 genomes]
rs7727453	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7727455	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7727608	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7733476	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7737266	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs890739	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9285017	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9314142	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9314143	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9314144	0.92[ASN][1000 genomes]
rs9314145	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9314146	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9314147	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9885158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9885192	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9885291	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9885310	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6859731	TTC37	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94811000-94889400	Weak transcription	Stomach Mucosa	stomach
2	chr5:94817400-94865600	Strong transcription	Osteobl	bone
3	chr5:94818000-94882400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:94824800-94866000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:94825000-94886200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:94825200-94866000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:94825400-94886400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr5:94826000-94886400	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr5:94826800-94886400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr5:94827200-94865600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:94827200-94866800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:94827200-94889600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:94828600-94873600	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr5:94828800-94885800	Strong transcription	Fetal Thymus	thymus
15	chr5:94829200-94866200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:94831400-94868400	Strong transcription	Fetal Intestine Large	intestine
17	chr5:94835200-94864800	Weak transcription	Spleen	Spleen
18	chr5:94835200-94881000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:94835400-94868000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:94836200-94866400	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr5:94836600-94867600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:94837000-94866600	Strong transcription	Adipose Nuclei	Adipose
23	chr5:94841400-94883400	Strong transcription	Primary B cells from cord blood	blood
24	chr5:94841600-94867600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:94841800-94886000	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr5:94842000-94866000	Strong transcription	NH-A	brain
27	chr5:94842000-94873600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr5:94842000-94884800	Strong transcription	Dnd41	blood
29	chr5:94842200-94882000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:94842200-94886000	Strong transcription	Primary B cells from peripheral blood	blood
31	chr5:94843800-94870200	Strong transcription	HUVEC	blood vessel
32	chr5:94845600-94879800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr5:94846400-94867600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr5:94846600-94881000	Weak transcription	Gastric	stomach
35	chr5:94847200-94865800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr5:94847400-94866200	Strong transcription	HSMM	muscle
37	chr5:94847400-94890000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr5:94848200-94867000	Weak transcription	Fetal Heart	heart
39	chr5:94849200-94890000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr5:94849400-94871400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr5:94849800-94872000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr5:94849800-94878200	Weak transcription	Fetal Intestine Small	intestine
43	chr5:94849800-94879800	Weak transcription	Fetal Stomach	stomach
44	chr5:94849800-94881400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr5:94850000-94867600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr5:94850600-94879200	Weak transcription	Small Intestine	intestine
47	chr5:94851200-94869000	Weak transcription	Brain Angular Gyrus	brain
48	chr5:94851800-94881200	Weak transcription	Right Ventricle	heart
49	chr5:94852200-94864600	Weak transcription	Brain Substantia Nigra	brain
50	chr5:94852800-94865600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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