Variant report

Variant	rs17085359
Chromosome Location	chr6:149115851-149115852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17087769	1.00[AMR][1000 genomes]
rs56289985	1.00[AMR][1000 genomes]
rs59540564	1.00[AMR][1000 genomes]
rs61509163	1.00[AMR][1000 genomes]
rs73778904	1.00[AMR][1000 genomes]
rs73778905	1.00[AMR][1000 genomes]
rs73778910	1.00[AMR][1000 genomes]
rs73778914	1.00[AMR][1000 genomes]
rs73778916	1.00[AMR][1000 genomes]
rs73778928	1.00[AMR][1000 genomes]
rs73778931	1.00[AMR][1000 genomes]
rs73778943	1.00[AMR][1000 genomes]
rs73781501	1.00[AMR][1000 genomes]
rs73783205	1.00[AMR][1000 genomes]
rs73789234	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981376	chr6:149115789-149121607	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149102800-149122600	Weak transcription	Ovary	ovary
2	chr6:149103600-149121600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:149104000-149116200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:149106200-149120800	Weak transcription	Fetal Heart	heart
5	chr6:149111400-149125000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:149112000-149119000	Weak transcription	Spleen	Spleen
7	chr6:149112200-149124800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:149112400-149119400	Weak transcription	Fetal Thymus	thymus
9	chr6:149112400-149119600	Weak transcription	Pancreas	Pancrea
10	chr6:149113200-149125000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:149113800-149116400	Weak transcription	Stomach Mucosa	stomach
12	chr6:149114800-149121200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:149115200-149116000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:149115200-149120400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:149115200-149125000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:149115400-149116000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:149115400-149116800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:149115400-149125000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:149115800-149116200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:149115800-149116200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:149115800-149116400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:149115800-149116600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr6:149115800-149116600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:149115800-149116600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:149115800-149116600	Enhancers	Aorta	Aorta
26	chr6:149115800-149116600	Enhancers	Osteobl	bone
27	chr6:149115800-149116800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:149115800-149117400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr6:149115800-149144800	Weak transcription	Primary B cells from cord blood	blood

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