Variant report

Variant	rs17085437
Chromosome Location	chr4:56041898-56041899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17085434	0.98[AFR][1000 genomes]
rs28548646	1.00[AMR][1000 genomes]
rs28698466	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56035800-56042200	Weak transcription	Right Atrium	heart
2	chr4:56036000-56050600	Weak transcription	Pancreas	Pancrea
3	chr4:56036200-56044400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:56036800-56044600	Weak transcription	Stomach Mucosa	stomach
5	chr4:56037800-56042200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:56038800-56042000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:56039400-56042200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:56039400-56043800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:56039600-56042000	Enhancers	HUVEC	blood vessel
10	chr4:56039600-56042200	Weak transcription	Placenta	Placenta
11	chr4:56039600-56043800	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:56040800-56042000	Enhancers	Osteobl	bone
13	chr4:56041200-56042600	Enhancers	NHLF	lung
14	chr4:56041200-56042800	Enhancers	HSMMtube	muscle
15	chr4:56041400-56042200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:56041400-56042200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:56041400-56042400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:56041400-56042400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:56041400-56042800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:56041400-56042800	Enhancers	HMEC	breast
21	chr4:56041400-56044400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:56041600-56042000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr4:56041600-56042000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:56041600-56042000	Flanking Active TSS	NHDF-Ad	bronchial
25	chr4:56041600-56042200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr4:56041600-56042400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:56041600-56042400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:56041600-56042400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:56041600-56042400	Enhancers	HSMM	muscle
30	chr4:56041600-56042400	Enhancers	NHEK	skin
31	chr4:56041600-56042600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr4:56041600-56042600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:56041600-56042600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:56041600-56042800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr4:56041600-56042800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr4:56041600-56042800	Enhancers	Hela-S3	cervix
37	chr4:56041600-56043000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr4:56041600-56043000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr4:56041600-56043000	Flanking Active TSS	NH-A	brain
40	chr4:56041800-56042000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:56041800-56042200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr4:56041800-56042400	Enhancers	H9 Cell Line	embryonic stem cell
43	chr4:56041800-56042400	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr4:56041800-56042600	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr4:56041800-56042800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr4:56041800-56042800	Enhancers	HUES48 Cell Line	embryonic stem cell

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