Variant report

Variant	rs28698466
Chromosome Location	chr4:56187758-56187759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:55837377..55838442-chr4:56187562..56188922,11	MCF-7	breast:
2	chr4:55864862..55865814-chr4:56187571..56188230,3	MCF-7	breast:
3	chr4:55864909..55865508-chr4:56187589..56188156,2	K562	blood:
4	chr4:56050706..56051403-chr4:56187206..56188167,3	K562	blood:
5	chr4:55837401..55838448-chr4:56187626..56188482,4	K562	blood:
6	chr4:55837333..55838455-chr4:56187448..56188491,5	MCF-7	breast:
7	chr4:56050488..56051475-chr4:56187155..56188482,6	MCF-7	breast:
8	chr4:55842594..55843356-chr4:56187739..56188757,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17085437	1.00[AMR][1000 genomes]
rs28548646	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56181000-56188200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:56181000-56188400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:56186000-56190400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:56186800-56189600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:56187000-56188000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:56187600-56189200	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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