Variant report

Variant	rs17086255
Chromosome Location	chr9:86035356-86035357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10116367	0.87[ASN][1000 genomes]
rs11140072	0.81[YRI][hapmap]
rs11140079	1.00[CEU][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12235233	1.00[CEU][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3860918	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7856827	0.91[CEU][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86013400-86041000	Weak transcription	Aorta	Aorta
2	chr9:86019400-86037600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:86021200-86041600	Weak transcription	Right Ventricle	heart
4	chr9:86029600-86038200	Weak transcription	Pancreas	Pancrea
5	chr9:86034200-86036400	Enhancers	Fetal Brain Male	brain
6	chr9:86034600-86035400	Enhancers	Fetal Lung	lung
7	chr9:86034600-86037200	Weak transcription	HepG2	liver
8	chr9:86034600-86038200	Weak transcription	Left Ventricle	heart
9	chr9:86034600-86038600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:86034600-86039000	Weak transcription	Right Atrium	heart
11	chr9:86035000-86035400	Enhancers	HSMMtube	muscle
12	chr9:86035000-86035600	Enhancers	Fetal Brain Female	brain
13	chr9:86035000-86035600	Enhancers	Fetal Muscle Leg	muscle
14	chr9:86035000-86035800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:86035200-86035400	Enhancers	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links