Variant report

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10116367	0.93[ASN][1000 genomes]
rs10868005	0.81[JPT][hapmap]
rs10868006	0.81[JPT][hapmap]
rs10868008	0.84[ASW][hapmap];0.86[LWK][hapmap];0.95[MKK][hapmap]
rs11140072	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs11140077	0.84[ASW][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap]
rs11140078	0.81[JPT][hapmap]
rs11140079	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140082	0.81[JPT][hapmap]
rs11140083	0.81[JPT][hapmap]
rs11140092	0.84[ASW][hapmap];0.86[LWK][hapmap];0.92[MKK][hapmap]
rs12235233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17086255	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4537377	0.81[JPT][hapmap]
rs4636280	0.81[JPT][hapmap]
rs56009714	1.00[AFR][1000 genomes]
rs56039713	0.81[AFR][1000 genomes]
rs7856827	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8181125	0.84[ASW][hapmap];0.87[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3860918	HNRNPK	cis	parietal	SCAN
rs3860918	UBQLN1	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86013400-86041000	Weak transcription	Aorta	Aorta
2	chr9:86021200-86041600	Weak transcription	Right Ventricle	heart
3	chr9:86034600-86038600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:86034600-86039000	Weak transcription	Right Atrium	heart
5	chr9:86035400-86041400	Weak transcription	Psoas Muscle	Psoas
6	chr9:86036800-86041200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr9:86037000-86038600	Enhancers	Fetal Muscle Leg	muscle
8	chr9:86037200-86038400	Enhancers	NHDF-Ad	bronchial
9	chr9:86037200-86039200	Enhancers	HepG2	liver
10	chr9:86037400-86038400	Enhancers	Fetal Lung	lung
11	chr9:86037400-86039000	Enhancers	Ovary	ovary
12	chr9:86037600-86038400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:86037600-86041000	Weak transcription	Adipose Nuclei	Adipose
14	chr9:86037800-86047200	Weak transcription	Fetal Stomach	stomach
15	chr9:86038000-86041400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:86038200-86038400	Enhancers	Fetal Muscle Trunk	muscle
17	chr9:86038200-86038400	Enhancers	Gastric	stomach
18	chr9:86038200-86038400	Enhancers	Rectal Smooth Muscle	rectum
19	chr9:86038200-86039200	Enhancers	Left Ventricle	heart
20	chr9:86038200-86040400	Enhancers	Pancreas	Pancrea

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