Variant report

Variant	rs11140092
Chromosome Location	chr9:86059732-86059733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10868008	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140069	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11140072	0.84[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.86[LWK][hapmap];0.92[MKK][hapmap];0.86[TSI][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11140077	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140079	1.00[LWK][hapmap];0.92[AFR][1000 genomes]
rs11140086	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12235233	0.81[YRI][hapmap];0.92[AFR][1000 genomes]
rs12683112	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12684510	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685254	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17086237	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2375922	0.80[CEU][hapmap]
rs28512300	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860918	0.84[ASW][hapmap];0.86[LWK][hapmap];0.92[MKK][hapmap]
rs56009714	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56039713	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57873233	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6559725	0.81[JPT][hapmap];0.80[LWK][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72745064	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856827	0.86[YRI][hapmap];0.92[AFR][1000 genomes]
rs7875766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8181119	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[ASN][1000 genomes]
rs8181125	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1048086	chr9:86040900-86059732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86047600-86062400	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:86053000-86065400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:86056200-86062200	Weak transcription	Spleen	Spleen
5	chr9:86056200-86069200	Weak transcription	Esophagus	oesophagus
6	chr9:86056800-86060600	Weak transcription	Fetal Kidney	kidney
7	chr9:86056800-86063800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:86057000-86060600	Weak transcription	HepG2	liver
9	chr9:86057000-86063600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:86057000-86066400	Weak transcription	A549	lung
11	chr9:86058800-86060000	Enhancers	NHDF-Ad	bronchial
12	chr9:86059000-86059800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:86059000-86059800	Enhancers	Adipose Nuclei	Adipose
14	chr9:86059000-86059800	Enhancers	Aorta	Aorta
15	chr9:86059000-86059800	Enhancers	Ovary	ovary
16	chr9:86059000-86059800	Enhancers	Right Atrium	heart
17	chr9:86059000-86059800	Enhancers	Right Ventricle	heart
18	chr9:86059000-86059800	Enhancers	Hela-S3	cervix
19	chr9:86059200-86059800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:86059200-86059800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr9:86059200-86060200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:86059200-86060200	Enhancers	Fetal Muscle Leg	muscle
23	chr9:86059200-86062000	Weak transcription	Psoas Muscle	Psoas
24	chr9:86059400-86059800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:86059400-86059800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:86059600-86059800	Enhancers	Left Ventricle	heart
27	chr9:86059600-86060400	Weak transcription	Osteobl	bone
28	chr9:86059600-86063200	Weak transcription	Placenta	Placenta
29	chr9:86059600-86063200	Weak transcription	Fetal Stomach	stomach
30	chr9:86059600-86081000	Weak transcription	Fetal Brain Male	brain

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