Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10868008	0.90[JPT][hapmap];0.80[LWK][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11140069	0.83[EUR][1000 genomes]
rs11140072	0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs11140077	0.90[JPT][hapmap];0.80[LWK][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs11140079	0.80[LWK][hapmap]
rs11140086	0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11140092	0.81[JPT][hapmap];0.80[LWK][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12683112	0.83[EUR][1000 genomes]
rs12684510	0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs12685254	0.83[EUR][1000 genomes]
rs17086237	0.83[EUR][1000 genomes]
rs28512300	0.85[EUR][1000 genomes]
rs56009714	0.83[EUR][1000 genomes]
rs56039713	0.83[EUR][1000 genomes]
rs56232497	0.81[EUR][1000 genomes]
rs57873233	0.81[EUR][1000 genomes]
rs72745064	0.83[EUR][1000 genomes]
rs72745071	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7875766	0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8181119	0.89[JPT][hapmap]
rs8181125	0.90[JPT][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6559725	CD27	trans	lymphoblastoid	seeQTL
rs6559725	RMI1	cis	cerebellum	SCAN
rs6559725	RHOB	trans	lymphoblastoid	seeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86053000-86065400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:86056200-86069200	Weak transcription	Esophagus	oesophagus
4	chr9:86056800-86063800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:86057000-86063600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:86057000-86066400	Weak transcription	A549	lung
7	chr9:86059600-86063200	Weak transcription	Placenta	Placenta
8	chr9:86059600-86063200	Weak transcription	Fetal Stomach	stomach
9	chr9:86059600-86081000	Weak transcription	Fetal Brain Male	brain
10	chr9:86059800-86063800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr9:86060200-86063400	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:86060800-86063600	Weak transcription	Fetal Kidney	kidney
13	chr9:86061200-86063200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:86061200-86081400	Weak transcription	HepG2	liver
15	chr9:86062200-86062600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:86062200-86062600	Enhancers	Spleen	Spleen
17	chr9:86062200-86065800	Enhancers	Left Ventricle	heart
18	chr9:86062400-86062600	Enhancers	Ovary	ovary
19	chr9:86062400-86062600	Enhancers	Psoas Muscle	Psoas
20	chr9:86062400-86063200	Enhancers	Colon Smooth Muscle	Colon

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