Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr9:86062942-86065838	SK-N-SH	brain:	n/a	chr9:86065257-86065271 chr9:86065497-86065511

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86045543..86047511-chr9:86062619..86064900,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238608	TF binding region

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6559725	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86053000-86065400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:86056200-86069200	Weak transcription	Esophagus	oesophagus
4	chr9:86056800-86063800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:86057000-86063600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:86057000-86066400	Weak transcription	A549	lung
7	chr9:86059600-86081000	Weak transcription	Fetal Brain Male	brain
8	chr9:86059800-86063800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:86060800-86063600	Weak transcription	Fetal Kidney	kidney
10	chr9:86061200-86081400	Weak transcription	HepG2	liver
11	chr9:86062200-86065800	Enhancers	Left Ventricle	heart
12	chr9:86062600-86063600	Weak transcription	Spleen	Spleen
13	chr9:86063000-86064600	Enhancers	Ovary	ovary
14	chr9:86063200-86064000	Enhancers	Placenta	Placenta
15	chr9:86063200-86064600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr9:86063200-86065200	Enhancers	Fetal Stomach	stomach
17	chr9:86063400-86063800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:86063400-86065000	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr9:86063400-86065600	Enhancers	Fetal Muscle Leg	muscle
20	chr9:86063400-86066200	Weak transcription	Colonic Mucosa	Colon

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