Variant report

Variant	rs4636280
Chromosome Location	chr9:86040349-86040350
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10217746	0.95[MEX][hapmap]
rs10868005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140079	0.81[JPT][hapmap]
rs11140081	0.95[MEX][hapmap]
rs11140082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140083	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140085	0.84[MEX][hapmap]
rs12235233	0.81[JPT][hapmap]
rs3860918	0.81[JPT][hapmap]
rs3893399	0.84[MEX][hapmap]
rs4014038	1.00[CEU][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4537377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7023220	0.85[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap]
rs8181122	0.89[MEX][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86013400-86041000	Weak transcription	Aorta	Aorta
2	chr9:86021200-86041600	Weak transcription	Right Ventricle	heart
3	chr9:86035400-86041400	Weak transcription	Psoas Muscle	Psoas
4	chr9:86036800-86041200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr9:86037600-86041000	Weak transcription	Adipose Nuclei	Adipose
6	chr9:86037800-86047200	Weak transcription	Fetal Stomach	stomach
7	chr9:86038000-86041400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr9:86038200-86040400	Enhancers	Pancreas	Pancrea
9	chr9:86038400-86045800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:86038400-86046600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:86038600-86040400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr9:86038600-86041400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:86038800-86040400	Enhancers	Fetal Intestine Large	intestine
14	chr9:86039200-86041200	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:86039200-86041200	Weak transcription	Gastric	stomach
16	chr9:86039200-86041200	Weak transcription	Right Atrium	heart
17	chr9:86039200-86041400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr9:86039200-86050000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:86039400-86041000	Weak transcription	Ovary	ovary
20	chr9:86039600-86041200	Enhancers	HepG2	liver
21	chr9:86039600-86041400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:86040000-86045800	Weak transcription	Fetal Lung	lung
23	chr9:86040000-86045800	Weak transcription	Small Intestine	intestine
24	chr9:86040000-86046000	Weak transcription	Fetal Heart	heart
25	chr9:86040200-86040400	Enhancers	Left Ventricle	heart
26	chr9:86040200-86040600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:86040200-86040600	Enhancers	Spleen	Spleen
28	chr9:86040200-86046600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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