Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86046794..86050465-chr9:86050692..86054566,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10217746	0.94[MEX][hapmap]
rs10868005	0.81[AMR][1000 genomes]
rs10868006	0.81[AMR][1000 genomes]
rs11140078	0.81[AMR][1000 genomes]
rs11140081	0.94[MEX][hapmap]
rs11140082	0.89[MEX][hapmap];0.81[AMR][1000 genomes]
rs11140083	0.84[MEX][hapmap];0.81[AMR][1000 genomes]
rs11140085	0.94[MEX][hapmap]
rs3893399	0.94[MEX][hapmap]
rs4014038	0.84[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4537377	0.82[AMR][1000 genomes]
rs4636280	0.89[MEX][hapmap];0.81[AMR][1000 genomes]
rs4877758	0.94[CEU][hapmap];0.87[CHB][hapmap];0.80[CHD][hapmap];0.92[JPT][hapmap];0.89[MEX][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4877759	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4877767	0.83[MEX][hapmap]
rs7023220	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1048086	chr9:86040900-86059732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86047400-86052600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:86047400-86056600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr9:86047400-86059000	Weak transcription	Placenta	Placenta
4	chr9:86047600-86052400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:86047600-86053800	Weak transcription	Aorta	Aorta
6	chr9:86047600-86055800	Weak transcription	Esophagus	oesophagus
7	chr9:86047600-86055800	Weak transcription	Ovary	ovary
8	chr9:86047600-86059200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:86047600-86062400	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:86048200-86056400	Weak transcription	A549	lung
11	chr9:86049400-86055200	Weak transcription	Gastric	stomach
12	chr9:86049400-86055200	Weak transcription	Spleen	Spleen
13	chr9:86049400-86055600	Weak transcription	Right Atrium	heart
14	chr9:86050000-86055200	Weak transcription	Right Ventricle	heart
15	chr9:86050400-86055600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr9:86051200-86054400	Weak transcription	Pancreas	Pancrea
17	chr9:86051200-86055400	Weak transcription	Left Ventricle	heart
18	chr9:86051200-86055600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr9:86051600-86055200	Weak transcription	Fetal Heart	heart
20	chr9:86051800-86055400	Weak transcription	Psoas Muscle	Psoas

Quick Search: