Variant report

Variant	rs17086298
Chromosome Location	chr9:86086887-86086888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86077262..86080210-chr9:86086531..86088132,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10512142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2375931	0.93[JPT][hapmap]
rs4507851	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4877780	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86074600-86093200	Weak transcription	Pancreas	Pancrea
2	chr9:86084000-86088000	Weak transcription	Lung	lung
3	chr9:86084600-86088000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:86084800-86087000	Enhancers	Hela-S3	cervix
5	chr9:86084800-86087400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:86085000-86090800	Enhancers	HepG2	liver
7	chr9:86085200-86087000	Enhancers	Psoas Muscle	Psoas
8	chr9:86085200-86087800	Enhancers	Adipose Nuclei	Adipose
9	chr9:86085200-86088200	Enhancers	NHDF-Ad	bronchial
10	chr9:86085400-86087600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:86085400-86088200	Enhancers	Fetal Intestine Large	intestine
12	chr9:86085400-86088800	Enhancers	Left Ventricle	heart
13	chr9:86085800-86088000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr9:86086000-86088000	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr9:86086000-86088800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr9:86086000-86089000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:86086000-86089400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr9:86086000-86090000	Enhancers	Stomach Mucosa	stomach
19	chr9:86086200-86087000	Enhancers	Brain Cingulate Gyrus	brain
20	chr9:86086200-86087200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:86086200-86087200	Enhancers	Placenta	Placenta
22	chr9:86086200-86087200	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr9:86086200-86088800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:86086400-86087200	Enhancers	Right Ventricle	heart
25	chr9:86086400-86087400	Enhancers	Duodenum Mucosa	Duodenum
26	chr9:86086400-86087600	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr9:86086400-86087800	Enhancers	GM12878-XiMat	blood
28	chr9:86086400-86088000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr9:86086400-86088000	Weak transcription	Ovary	ovary
30	chr9:86086400-86088400	Enhancers	Primary B cells from cord blood	blood
31	chr9:86086400-86088800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr9:86086400-86089800	Enhancers	Right Atrium	heart
33	chr9:86086600-86087200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr9:86086600-86087200	Enhancers	A549	lung
35	chr9:86086600-86087400	Weak transcription	Fetal Muscle Leg	muscle
36	chr9:86086600-86088200	Enhancers	Primary B cells from peripheral blood	blood
37	chr9:86086600-86088800	Enhancers	NH-A	brain
38	chr9:86086600-86090000	Enhancers	Fetal Intestine Small	intestine
39	chr9:86086800-86087800	Enhancers	HUVEC	blood vessel
40	chr9:86086800-86088200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr9:86086800-86090000	Enhancers	Small Intestine	intestine

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