Variant report

Variant	rs10512142
Chromosome Location	chr9:86086086-86086087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10512135	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17086251	1.00[AFR][1000 genomes]
rs17086298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17086436	1.00[AFR][1000 genomes]
rs1929542	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2375931	0.93[JPT][hapmap]
rs4507851	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4877780	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86074600-86093200	Weak transcription	Pancreas	Pancrea
2	chr9:86079400-86086400	Weak transcription	Right Ventricle	heart
3	chr9:86081800-86086400	Weak transcription	Right Atrium	heart
4	chr9:86084000-86086200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr9:86084000-86086600	Enhancers	Fetal Muscle Leg	muscle
6	chr9:86084000-86088000	Weak transcription	Lung	lung
7	chr9:86084600-86088000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:86084800-86087000	Enhancers	Hela-S3	cervix
9	chr9:86084800-86087400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr9:86085000-86090800	Enhancers	HepG2	liver
11	chr9:86085200-86087000	Enhancers	Psoas Muscle	Psoas
12	chr9:86085200-86087800	Enhancers	Adipose Nuclei	Adipose
13	chr9:86085200-86088200	Enhancers	NHDF-Ad	bronchial
14	chr9:86085400-86087600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:86085400-86088200	Enhancers	Fetal Intestine Large	intestine
16	chr9:86085400-86088800	Enhancers	Left Ventricle	heart
17	chr9:86085600-86086800	Weak transcription	HSMM	muscle
18	chr9:86085800-86086200	Weak transcription	Placenta	Placenta
19	chr9:86085800-86088000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr9:86086000-86086200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:86086000-86086200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr9:86086000-86088000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr9:86086000-86088800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr9:86086000-86089000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:86086000-86089400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr9:86086000-86090000	Enhancers	Stomach Mucosa	stomach

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