Variant report

Variant	rs1929542
Chromosome Location	chr9:86136573-86136574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10512135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512142	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17086251	1.00[AFR][1000 genomes]
rs17086406	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs17086436	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4507851	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86114800-86145800	Weak transcription	Aorta	Aorta
2	chr9:86115200-86141000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:86129800-86141800	Weak transcription	Left Ventricle	heart
4	chr9:86135000-86137000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr9:86135000-86137800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:86135400-86136600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:86135400-86137000	Enhancers	Primary B cells from cord blood	blood
8	chr9:86135600-86137000	Enhancers	Primary B cells from peripheral blood	blood
9	chr9:86135800-86138600	Weak transcription	Psoas Muscle	Psoas
10	chr9:86136000-86137000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr9:86136000-86137200	Enhancers	Hela-S3	cervix
12	chr9:86136200-86136600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:86136200-86136800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr9:86136200-86137000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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