Variant report

Variant	rs10512135
Chromosome Location	chr9:86127972-86127973
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10512142	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17086251	1.00[AFR][1000 genomes]
rs17086406	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs17086436	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1929542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507851	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86114800-86145800	Weak transcription	Aorta	Aorta
2	chr9:86115200-86141000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:86118400-86129000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:86123800-86129200	Weak transcription	HepG2	liver
5	chr9:86125200-86128000	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:86125200-86128400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr9:86125400-86129200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:86125400-86131800	Weak transcription	Small Intestine	intestine
9	chr9:86126000-86128000	Enhancers	Psoas Muscle	Psoas
10	chr9:86126800-86128800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr9:86127400-86128000	Enhancers	Right Atrium	heart
12	chr9:86127600-86128200	Enhancers	Adipose Nuclei	Adipose
13	chr9:86127800-86128200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr9:86127800-86128600	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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