Variant report

Variant	rs17087179
Chromosome Location	chr4:57680646-57680647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10034440	1.00[AMR][1000 genomes]
rs17087167	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087169	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087171	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087172	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087174	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2037045	1.00[AMR][1000 genomes]
rs28415944	1.00[AMR][1000 genomes]
rs28589515	1.00[AMR][1000 genomes]
rs28613467	1.00[AMR][1000 genomes]
rs28627100	1.00[AMR][1000 genomes]
rs28734468	1.00[AMR][1000 genomes]
rs28740801	1.00[AMR][1000 genomes]
rs7689218	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv530121	chr4:57167367-57695576	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57673200-57683800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:57676200-57681800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:57679200-57682400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:57680000-57681600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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