Variant report

Variant	rs7689218
Chromosome Location	chr4:57658004-57658005
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10034440	1.00[AMR][1000 genomes]
rs17087167	1.00[AMR][1000 genomes]
rs17087169	1.00[AMR][1000 genomes]
rs17087171	1.00[AMR][1000 genomes]
rs17087172	1.00[AMR][1000 genomes]
rs17087174	1.00[AMR][1000 genomes]
rs17087179	1.00[AMR][1000 genomes]
rs2037045	1.00[AMR][1000 genomes]
rs28415944	1.00[AMR][1000 genomes]
rs28589515	1.00[AMR][1000 genomes]
rs28613467	1.00[AMR][1000 genomes]
rs28627100	1.00[AMR][1000 genomes]
rs28734468	1.00[AMR][1000 genomes]
rs28740801	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv530121	chr4:57167367-57695576	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57653800-57665800	Weak transcription	Ovary	ovary
2	chr4:57654000-57659800	Weak transcription	NH-A	brain
3	chr4:57657000-57658400	Enhancers	GM12878-XiMat	blood
4	chr4:57657800-57665600	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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