Variant report

Variant	rs17087199
Chromosome Location	chr9:72629112-72629113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12005139	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17087211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17087224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4323533	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7873680	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1035668	chr9:72555053-72632796	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1051004	chr9:72557761-72632015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72621200-72635400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:72626200-72629200	Enhancers	HSMM	muscle
3	chr9:72626400-72629200	Enhancers	NH-A	brain
4	chr9:72626600-72629200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr9:72627000-72629200	Enhancers	Stomach Smooth Muscle	stomach
6	chr9:72627600-72629200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:72627600-72629200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:72627600-72629200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:72627600-72629200	Enhancers	HMEC	breast
10	chr9:72627800-72632600	Weak transcription	Ovary	ovary
11	chr9:72627800-72633200	Weak transcription	Fetal Lung	lung
12	chr9:72628200-72629200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:72628200-72629200	Enhancers	NHDF-Ad	bronchial
14	chr9:72628200-72629200	Enhancers	NHEK	skin
15	chr9:72628200-72629200	Enhancers	NHLF	lung
16	chr9:72628200-72629400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:72628400-72629200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:72628400-72629200	Enhancers	HSMMtube	muscle
19	chr9:72628800-72629200	Enhancers	Esophagus	oesophagus
20	chr9:72628800-72629200	Enhancers	Hela-S3	cervix
21	chr9:72629000-72629200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:72629000-72630800	Weak transcription	Placenta Amnion	Placenta Amnion

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