Variant report

Variant	rs17087212
Chromosome Location	chr4:57737282-57737283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:57734226..57738825-chr4:57772545..57776428,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000084093	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2137767	1.00[AMR][1000 genomes]
rs2137768	1.00[AMR][1000 genomes]
rs2137769	1.00[AMR][1000 genomes]
rs28507738	1.00[EUR][1000 genomes]
rs57687520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57795248	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58233353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60003185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60274669	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61401578	1.00[AMR][1000 genomes]
rs61471505	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6843793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs796681	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv822561	chr4:57736121-57747867	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57727800-57737600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:57727800-57740600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:57736400-57737400	Enhancers	Fetal Muscle Leg	muscle
4	chr4:57736800-57738000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:57736800-57738200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:57737000-57737400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:57737000-57737400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:57737000-57737400	Enhancers	Primary hematopoietic stem cells	blood
9	chr4:57737000-57737400	Enhancers	HSMM	muscle
10	chr4:57737000-57737800	Enhancers	Fetal Brain Female	brain
11	chr4:57737000-57738000	Enhancers	Fetal Brain Male	brain
12	chr4:57737000-57738200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr4:57737200-57737400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
14	chr4:57737200-57737400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
15	chr4:57737200-57737400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:57737200-57737400	Enhancers	Brain Substantia Nigra	brain
17	chr4:57737200-57737600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:57737200-57737600	Enhancers	Brain Germinal Matrix	brain
19	chr4:57737200-57737600	Enhancers	Brain Hippocampus Middle	brain
20	chr4:57737200-57737600	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr4:57737200-57737600	Enhancers	Fetal Lung	lung
22	chr4:57737200-57737600	Active TSS	Fetal Muscle Trunk	muscle
23	chr4:57737200-57737600	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr4:57737200-57737800	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr4:57737200-57737800	Enhancers	Brain Angular Gyrus	brain
26	chr4:57737200-57737800	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr4:57737200-57738000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:57737200-57738000	Enhancers	H9 Cell Line	embryonic stem cell
29	chr4:57737200-57738000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:57737200-57738000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr4:57737200-57738000	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr4:57737200-57738000	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr4:57737200-57738000	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr4:57737200-57738000	Enhancers	Primary B cells from peripheral blood	blood
35	chr4:57737200-57738000	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr4:57737200-57738000	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr4:57737200-57738000	Enhancers	Right Atrium	heart
38	chr4:57737200-57738000	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr4:57737200-57738000	Enhancers	Dnd41	blood
40	chr4:57737200-57738000	Enhancers	HSMMtube	muscle
41	chr4:57737200-57738000	Enhancers	NHDF-Ad	bronchial
42	chr4:57737200-57738200	Enhancers	H1 Cell Line	embryonic stem cell
43	chr4:57737200-57738200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr4:57737200-57738200	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr4:57737200-57738200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr4:57737200-57738200	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr4:57737200-57738200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr4:57737200-57738200	Enhancers	Brain Cingulate Gyrus	brain
49	chr4:57737200-57738200	Enhancers	Fetal Stomach	stomach
50	chr4:57737200-57738600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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