Variant report

Variant	rs17089302
Chromosome Location	chr13:54717431-54717432
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12429828	0.87[AFR][1000 genomes]
rs12430260	0.88[AFR][1000 genomes]
rs1591500	1.00[AMR][1000 genomes]
rs17089308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17089310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17604306	0.83[AFR][1000 genomes]
rs2050378	0.92[AFR][1000 genomes]
rs2152084	0.92[AFR][1000 genomes]
rs56820989	1.00[AMR][1000 genomes]
rs56921596	1.00[AMR][1000 genomes]
rs57804893	0.92[AFR][1000 genomes]
rs57851761	1.00[AMR][1000 genomes]
rs58112675	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59008182	1.00[AMR][1000 genomes]
rs60247242	1.00[AMR][1000 genomes]
rs60572618	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049	chr13:54684354-54728981	Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv561701	chr13:54711276-54826104	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54708600-54718800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:54714800-54721200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:54717000-54718600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links